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BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
PAYNEDVDRPMVVPPDAICFNCDKPIDAGDVNSYVWIPAGQGYFFHFGCFKCNRCKYRLGHNKFYSKDGKAWCIPCALGR
DVRVPTRRWHTSYVNTHRTGSRLTGHF

The query sequence (length=107) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 6yxy:BX 133 114 1.0000 0.8045 0.9386 9.18e-76 7aoi:BX, 6hiv:BX, 6hix:BX
2 7aih:Ax 167 114 0.7757 0.4970 0.7281 6.79e-59 7am2:Ax, 7ane:Ax
3 1x4k:A 72 46 0.1402 0.2083 0.3261 7.72e-04
4 2cup:A 101 63 0.1869 0.1980 0.3175 0.001
5 2d8z:A 70 58 0.1869 0.2857 0.3448 0.001
6 1x61:A 72 32 0.1215 0.1806 0.4062 0.002
7 1x63:A 82 58 0.1869 0.2439 0.3448 0.003
8 2ehe:A 82 32 0.1215 0.1585 0.4062 0.034
9 8y6k:A 741 35 0.1215 0.0175 0.3714 0.037 2bra:A, 2bra:B, 2bry:A, 2bry:B, 2c4c:A, 2c4c:B, 4txi:A, 4txk:A
10 1wyh:A 72 45 0.1308 0.1944 0.3111 0.044
11 2d8y:A 91 66 0.1682 0.1978 0.2727 0.049
12 2mbv:A 96 56 0.1495 0.1667 0.2857 0.080
13 4yci:C 105 51 0.1682 0.1714 0.3529 0.12
14 2dfy:X 158 71 0.2150 0.1456 0.3239 0.17 2dfy:C, 1rut:X
15 1b8t:A 192 37 0.1215 0.0677 0.3514 0.20 1ctl:A
16 2cur:A 69 58 0.1495 0.2319 0.2759 0.25
17 2egq:A 77 59 0.1682 0.2338 0.3051 0.45
18 1cxx:A 59 37 0.1121 0.2034 0.3243 0.48 1ibi:A, 1qli:A
19 2lxd:A 123 42 0.1308 0.1138 0.3333 0.56 2l6y:B, 2l6z:C
20 4kfz:B 148 73 0.2150 0.1554 0.3151 0.63 4kfz:A, 2xjy:A, 2xjz:A, 2xjz:B, 2xjz:C, 2xjz:D, 2xjz:E, 2ypa:C
21 4kfz:B 148 42 0.1308 0.0946 0.3333 0.99 4kfz:A, 2xjy:A, 2xjz:A, 2xjz:B, 2xjz:C, 2xjz:D, 2xjz:E, 2ypa:C
22 2co8:A 82 35 0.1215 0.1585 0.3714 0.75
23 2cuq:A 80 58 0.1589 0.2125 0.2931 0.75
24 7lt9:B 131 56 0.1963 0.1603 0.3750 1.0 7d2s:B, 7d2t:B, 7d2t:D, 7d2u:B, 1nyp:A, 1u5s:B
25 2dj7:A 80 65 0.1682 0.2250 0.2769 2.4
26 7xfz:A 241 30 0.1215 0.0539 0.4333 3.0 7xg0:A, 7xg1:A, 7xg2:A, 7xg3:A, 7xg4:A
27 1g47:A 70 37 0.1028 0.1571 0.2973 3.3 2kbx:B
28 2o13:A 58 37 0.1215 0.2241 0.3514 3.5
29 9b4h:A 1908 69 0.1682 0.0094 0.2609 3.8 9b4h:B, 8wa2:A, 8wa2:D, 8wa2:F, 8wa2:B, 8wa2:C, 8wa2:E
30 4mlp:C 492 30 0.1028 0.0224 0.3667 4.5 7ej9:A, 7ej9:B, 4i6g:A, 4i6g:B, 6kx8:A, 6kx8:B, 4mlp:A, 4mlp:B, 4mlp:D, 4u8h:A, 4u8h:C, 7v8y:A, 7v8z:A
31 3f6q:B 72 37 0.1028 0.1528 0.2973 5.0 4hi8:B, 4hi9:B
32 7qb0:A 127 57 0.1682 0.1417 0.3158 5.3
33 2miu:A 98 61 0.1776 0.1939 0.3115 5.8
34 2d8x:A 70 32 0.1028 0.1571 0.3438 6.1
35 4v4n:Ae 62 44 0.1215 0.2097 0.2955 6.9 4v6u:Be
36 1m3v:A 122 32 0.1028 0.0902 0.3438 8.5
37 1fz0:C 388 25 0.1028 0.0284 0.4400 8.5 1fz1:C, 1fz2:C, 1fz8:C, 1fz8:D, 1fz9:D, 1fz9:C, 1xmf:C, 1xve:C, 1xvf:D, 1xvg:C, 1xvg:D
38 1x4l:A 72 62 0.1495 0.2222 0.2581 8.5
39 8ge0:A 188 64 0.1776 0.1011 0.2969 9.6 8gdx:A, 8ge0:B, 8ge0:C
40 2l4z:A 121 32 0.1028 0.0909 0.3438 9.6

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218