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BioLiP
>protein
PAVTYYRLEEVAKRNTSEETWMVLHGRVYDLTRFLSEHPGGEEVLREQAGADATESFEDVGHSPDAREMSKQYYIGDVHP
NDLKPK

The query sequence (length=86) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 2i89:A 90 86 0.9767 0.9333 0.9767 1.38e-59 2i89:B, 2i89:C, 2i89:D, 1icc:A, 1icc:B, 1icc:D, 1lj0:A, 1lj0:B, 1lj0:C, 1lj0:D, 3mus:B
2 1awp:A 86 85 0.9070 0.9070 0.9176 2.30e-56 1awp:B, 1b5m:A, 1eue:A, 1eue:B, 4hil:A, 4hil:B, 1icc:C, 3mus:A
3 3ner:B 91 84 0.7907 0.7473 0.8095 2.22e-49 3ner:A
4 3ozz:B 82 81 0.6860 0.7195 0.7284 4.70e-42
5 2i96:A 108 85 0.6977 0.5556 0.7059 3.22e-41 4hin:A, 4hin:B, 4hin:C, 4hin:D, 2m33:A
6 1hko:A 104 81 0.6628 0.5481 0.7037 5.95e-41 1aqa:A, 1cyo:A, 1ehb:A, 1es1:A, 1f03:A, 1f04:A, 1i5u:A, 1ib7:A, 1j0q:A, 1jex:A, 1lqx:A, 1lr6:A, 1m20:A, 1m2i:A, 1m2m:A, 1m59:A, 1nx7:A, 1sh4:A, 1u9m:A, 1u9m:B, 1u9m:C, 1u9m:D, 1u9m:E, 1u9m:F, 1u9u:A, 3x32:A, 3x33:A, 3x34:A, 3x35:A
7 1aw3:A 94 80 0.6512 0.5957 0.7000 3.55e-39 1axx:A, 2axx:A, 1b5a:A, 1b5b:A, 1bfx:A, 1blv:A, 1do9:A, 1mny:A
8 2ibj:A 86 76 0.5698 0.5698 0.6447 3.71e-33
9 4b8n:B 90 73 0.3605 0.3444 0.4247 1.44e-15 4b8n:A, 4b8n:C, 4b8n:D
10 1kbi:A 504 57 0.3372 0.0575 0.5088 1.63e-14 1fcb:A, 1fcb:B, 1kbi:B, 1kbj:A, 1kbj:B, 3ks0:A, 3ks0:B, 1lco:A, 1lco:B, 1ldc:A, 1ltd:A, 1ltd:B, 2oz0:A, 2oz0:B, 1qcw:A, 1qcw:B, 1sze:A, 1sze:B, 1szf:A, 1szf:B, 1szg:A, 1szg:B
11 1cxy:A 81 77 0.3023 0.3210 0.3377 1.26e-12
12 1x3x:A 82 77 0.3605 0.3780 0.4026 2.85e-12 1x3x:B
13 3lf5:A 87 68 0.2791 0.2759 0.3529 1.85e-11 3lf5:B
14 8tgb:A 108 75 0.2907 0.2315 0.3333 4.24e-11 8tgb:B
15 7bwh:A 88 79 0.3023 0.2955 0.3291 8.93e-11
16 1sox:A 463 81 0.3372 0.0626 0.3580 4.52e-06 2a9a:A, 2a9a:B, 2a9b:A, 2a9c:A, 2a9c:B, 2a9d:A, 2a9d:B, 3hbp:A, 3hbq:A, 1sox:B
17 1mj4:A 79 78 0.2791 0.3038 0.3077 3.67e-05
18 6nzx:A 76 67 0.2442 0.2763 0.3134 0.11
19 5jyx:B 109 36 0.1395 0.1101 0.3333 1.1 5jyx:A, 5jyx:E, 5jyx:C, 5jyx:J, 5jyx:D, 5jyx:H, 5jyx:F, 5jyx:O, 5jyx:G, 5jyx:L, 5jyx:I, 5jyx:K, 5jyx:M, 5jyx:N
20 4z71:B 163 64 0.1977 0.1043 0.2656 1.5 5kde:A, 5kdf:A, 1wcf:A, 4z70:A, 4z70:B, 4z70:C, 4z71:A, 4z71:C, 4z72:A, 4z73:A, 4z73:B, 4z73:C, 4z73:D, 4z73:F, 4z73:G, 4z73:E, 4z73:H, 4z73:I, 4z73:J, 4z73:K, 4z73:L, 4z74:A, 4z74:B, 4z74:C, 4z74:D, 4z74:F, 4z74:G, 4z74:E, 4z74:H, 4z74:I, 4z74:J, 4z74:K, 4z74:L
21 3bh4:A 483 37 0.1977 0.0352 0.4595 2.7 3bh4:B, 1e3x:A, 1e3z:A, 1e40:A, 1e43:A
22 2dkc:A 536 61 0.1395 0.0224 0.1967 3.8 2dkc:B, 2dkd:A, 2dkd:B
23 2gjp:A 481 37 0.1744 0.0312 0.4054 4.5 2gjr:A, 1w9x:A
24 5c71:A 583 43 0.1512 0.0223 0.3023 4.6 5c71:C
25 3e23:A 198 45 0.1860 0.0808 0.3556 7.1
26 2d3l:A 481 37 0.1628 0.0291 0.3784 7.2 2d3n:A, 1wp6:A, 1wpc:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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