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BioLiP
>protein
PAVTYYRLEEVAKHNTSESTWMVLHGRVYDLTRFLSEHPGGEEVLREQAGADATESFEDVGHSPDAREMSKQYYIGDVHP
NDLKP

The query sequence (length=85) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 2i89:A 90 85 1.0000 0.9444 1.0000 1.32e-60 2i89:B, 2i89:C, 2i89:D, 1icc:A, 1icc:B, 1icc:D, 1lj0:A, 1lj0:B, 1lj0:C, 1lj0:D, 3mus:B
2 1awp:A 86 85 0.8941 0.8837 0.8941 1.18e-54 1awp:B, 1b5m:A, 1eue:A, 1eue:B, 4hil:A, 4hil:B, 1icc:C, 3mus:A
3 3ner:B 91 84 0.7765 0.7253 0.7857 1.26e-47 3ner:A
4 3ozz:B 82 81 0.7176 0.7439 0.7531 9.16e-44
5 1hko:A 104 81 0.6941 0.5673 0.7284 9.24e-43 1aqa:A, 1cyo:A, 1ehb:A, 1es1:A, 1f03:A, 1f04:A, 1i5u:A, 1ib7:A, 1j0q:A, 1jex:A, 1lqx:A, 1lr6:A, 1m20:A, 1m2i:A, 1m2m:A, 1m59:A, 1nx7:A, 1sh4:A, 1u9m:A, 1u9m:B, 1u9m:C, 1u9m:D, 1u9m:E, 1u9m:F, 1u9u:A, 3x32:A, 3x33:A, 3x34:A, 3x35:A
6 2i96:A 108 81 0.7059 0.5556 0.7407 1.28e-42 4hin:A, 4hin:B, 4hin:C, 4hin:D, 2m33:A
7 1aw3:A 94 80 0.6824 0.6170 0.7250 5.89e-41 1axx:A, 2axx:A, 1b5a:A, 1b5b:A, 1bfx:A, 1blv:A, 1do9:A, 1mny:A
8 2ibj:A 86 76 0.5765 0.5698 0.6447 3.34e-33
9 4b8n:B 90 73 0.3765 0.3556 0.4384 1.80e-16 4b8n:A, 4b8n:C, 4b8n:D
10 1kbi:A 504 56 0.3529 0.0595 0.5357 1.28e-14 1fcb:A, 1fcb:B, 1kbi:B, 1kbj:A, 1kbj:B, 3ks0:A, 3ks0:B, 1lco:A, 1lco:B, 1ldc:A, 1ltd:A, 1ltd:B, 2oz0:A, 2oz0:B, 1qcw:A, 1qcw:B, 1sze:A, 1sze:B, 1szf:A, 1szf:B, 1szg:A, 1szg:B
11 1cxy:A 81 77 0.3176 0.3333 0.3506 3.14e-13
12 1x3x:A 82 77 0.3765 0.3902 0.4156 4.82e-13 1x3x:B
13 8tgb:A 108 75 0.3176 0.2500 0.3600 6.50e-13 8tgb:B
14 3lf5:A 87 78 0.3294 0.3218 0.3590 1.67e-12 3lf5:B
15 7bwh:A 88 79 0.3294 0.3182 0.3544 1.84e-12
16 1mj4:A 79 78 0.2941 0.3165 0.3205 1.90e-06
17 1sox:A 463 81 0.3412 0.0626 0.3580 1.94e-06 2a9a:A, 2a9a:B, 2a9b:A, 2a9c:A, 2a9c:B, 2a9d:A, 2a9d:B, 3hbp:A, 3hbq:A, 1sox:B
18 6nzx:A 76 67 0.2471 0.2763 0.3134 0.026
19 5jyx:B 109 36 0.1412 0.1101 0.3333 1.1 5jyx:A, 5jyx:E, 5jyx:C, 5jyx:J, 5jyx:D, 5jyx:H, 5jyx:F, 5jyx:O, 5jyx:G, 5jyx:L, 5jyx:I, 5jyx:K, 5jyx:M, 5jyx:N
20 4z71:B 163 64 0.2000 0.1043 0.2656 1.8 5kde:A, 5kdf:A, 1wcf:A, 4z70:A, 4z70:B, 4z70:C, 4z71:A, 4z71:C, 4z72:A, 4z73:A, 4z73:B, 4z73:C, 4z73:D, 4z73:F, 4z73:G, 4z73:E, 4z73:H, 4z73:I, 4z73:J, 4z73:K, 4z73:L, 4z74:A, 4z74:B, 4z74:C, 4z74:D, 4z74:F, 4z74:G, 4z74:E, 4z74:H, 4z74:I, 4z74:J, 4z74:K, 4z74:L
21 3bh4:A 483 37 0.2000 0.0352 0.4595 2.6 3bh4:B, 1e3x:A, 1e3z:A, 1e40:A, 1e43:A
22 2gjp:A 481 37 0.1765 0.0312 0.4054 4.5 2gjr:A, 1w9x:A
23 2dkc:A 536 61 0.1412 0.0224 0.1967 5.4 2dkc:B, 2dkd:A, 2dkd:B
24 2d3l:A 481 37 0.1647 0.0291 0.3784 6.4 2d3n:A, 1wp6:A, 1wpc:A
25 3e23:A 198 45 0.1882 0.0808 0.3556 7.8

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218