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TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
PAVHLSNGPGQEPIAVMTFDLTKITKTSSSFEVRTWDPEGVIFYGDTNPKDDWFMLGLRDGRPEIQLHNHWAQLTVGAGP
RLDDGRWHQVEVKMEGDSVLLEVDGEEVLRLRQVSGPLTSKRHPIMRIALGGLLFPASNLRLPLVPALDGCLRRDSWLDK
QAEISASAPTSLRSC

The query sequence (length=175) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 1kdk:A 177 175 1.0000 0.9887 1.0000 1.78e-128 1d2s:A, 1f5f:A, 1kdm:A, 1lhn:A, 1lho:A, 1lhu:A, 1lhv:A, 1lhw:A, 6pya:A, 6pyb:A, 6pyf:A, 6ulb:A
2 1h30:A 391 148 0.2400 0.1074 0.2838 6.14e-19 2c5d:A, 2c5d:B, 4ra0:A, 4ra0:B, 5vxz:A, 5vxz:B
3 5ik7:A 381 164 0.2571 0.1181 0.2744 2.20e-07 1dyk:A, 5ik4:A, 5ik5:A, 5ik7:B, 5ik8:B, 5ik8:A, 1okq:A, 1qu0:A, 1qu0:B, 1qu0:C, 1qu0:D
4 5ik7:A 381 82 0.1314 0.0604 0.2805 0.22 1dyk:A, 5ik4:A, 5ik5:A, 5ik7:B, 5ik8:B, 5ik8:A, 1okq:A, 1qu0:A, 1qu0:B, 1qu0:C, 1qu0:D
5 2jd4:A 375 143 0.2229 0.1040 0.2727 2.48e-05 2jd4:B
6 2jd4:A 375 134 0.2229 0.1040 0.2910 5.79e-05 2jd4:B
7 3sh5:A 183 102 0.2000 0.1913 0.3431 1.23e-04
8 3poy:A 1005 159 0.2343 0.0408 0.2579 0.001 3asi:A, 3b3q:E, 3b3q:F, 3biw:E, 3biw:F, 3biw:G, 3bod:A, 2h0b:A, 2h0b:B, 2h0b:C, 2h0b:D, 2r16:A, 2r1d:H, 2r1d:B, 2r1d:D, 2r1d:I, 3vkf:C, 3vkf:D, 2wqz:C, 2wqz:D, 2xb6:C, 2xb6:D, 5z8y:B, 5z8y:D, 5z8y:F, 5z8y:H
9 3poy:A 1005 82 0.1257 0.0219 0.2683 0.12 3asi:A, 3b3q:E, 3b3q:F, 3biw:E, 3biw:F, 3biw:G, 3bod:A, 2h0b:A, 2h0b:B, 2h0b:C, 2h0b:D, 2r16:A, 2r1d:H, 2r1d:B, 2r1d:D, 2r1d:I, 3vkf:C, 3vkf:D, 2wqz:C, 2wqz:D, 2xb6:C, 2xb6:D, 5z8y:B, 5z8y:D, 5z8y:F, 5z8y:H
10 3poy:A 1005 96 0.1314 0.0229 0.2396 1.8 3asi:A, 3b3q:E, 3b3q:F, 3biw:E, 3biw:F, 3biw:G, 3bod:A, 2h0b:A, 2h0b:B, 2h0b:C, 2h0b:D, 2r16:A, 2r1d:H, 2r1d:B, 2r1d:D, 2r1d:I, 3vkf:C, 3vkf:D, 2wqz:C, 2wqz:D, 2xb6:C, 2xb6:D, 5z8y:B, 5z8y:D, 5z8y:F, 5z8y:H
11 5mc9:A 597 69 0.1029 0.0302 0.2609 0.005
12 5mc9:A 597 81 0.0971 0.0285 0.2099 4.1
13 3t6s:B 342 32 0.0971 0.0497 0.5312 0.76
14 7pkt:u 133 56 0.1143 0.1504 0.3571 1.5
15 3mel:C 214 104 0.1600 0.1308 0.2692 1.9 3mel:A, 3mel:B, 3mel:D
16 8sl1:A 843 53 0.1086 0.0225 0.3585 2.0
17 2wjs:A 519 130 0.1600 0.0539 0.2154 3.0
18 5dxo:A 272 54 0.0971 0.0625 0.3148 3.7 5dxn:A, 5dxo:B
19 7bj4:A 406 111 0.1886 0.0813 0.2973 3.9 7bj4:B, 7bj4:C, 7bj4:D, 7bj4:E, 7bj4:F, 7bj4:G, 7bj4:H, 7bj4:I, 7bj4:J, 7bjc:A, 7bjc:B, 7bjc:C, 7bjc:D, 7bjc:E, 7bjc:F, 7bjc:G, 7bjc:H, 7bjc:I, 7bjc:J
20 5xtc:r 459 77 0.1143 0.0436 0.2597 6.9 5xtd:r, 5xth:r, 5xti:r, 5xti:Br
21 5jul:A 1233 59 0.0971 0.0138 0.2881 7.0 5jul:B, 5jul:C, 5jul:D, 5jul:E, 5jul:F, 5jul:G, 5jul:H, 5jul:I, 5jul:J, 5jul:K, 5jul:L, 5jul:M, 5jul:N, 5jul:O, 5jul:P
22 8f9x:A 230 53 0.0914 0.0696 0.3019 8.2 8f9x:B, 8f9x:C, 8f9x:D, 8f9x:E, 8f9x:F, 8f9x:G, 8f9x:H, 8f9x:I, 8f9x:J
23 1o5k:A 295 61 0.1314 0.0780 0.3770 9.0
24 7v2c:r 459 77 0.1029 0.0392 0.2338 9.1 7v2d:r, 7v2e:r, 7v2f:r, 7v2h:r, 7v2k:r, 7v2r:r, 7v30:r, 7v31:r, 7v32:r, 7v33:r, 7v3m:r, 7vbl:r, 7vbp:r, 7vc0:r, 7vwl:r, 7vxs:r, 7vy1:r, 7vy9:r, 7vye:r, 7vyg:r, 7vyi:r, 7vys:r, 7vz8:r, 7vzv:r, 7vzw:r, 7w00:r, 7w0h:r, 7w0r:r, 7w0y:r, 7w1o:r, 7w1p:r, 7w1t:r, 7w1u:r, 7w1v:r, 7w1z:r, 7w20:r, 7w2k:r, 7w2l:r, 7w2r:r, 7w2u:r, 7w2y:r, 7w31:r, 7w32:r, 7w35:r, 7w4c:r, 7w4d:r, 7w4e:r, 7w4f:r, 7w4g:r, 7w4j:r, 7w4k:r, 7w4l:r, 7w4m:r, 7w4n:r, 7w4q:r
25 9f14:A 324 65 0.0971 0.0525 0.2615 9.2 9f14:B, 9fdd:A, 9fdd:B, 9fdd:C, 9fdd:D, 9fdd:E, 9fdd:F, 9fdd:G, 9fdd:H, 4lq2:A, 4lq5:A, 4m4g:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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