Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
PATVAELQAEIAAWIHPLNPDRRPGGTIAKLLEEIGELIASDRDPLEVADVLILALDLATLLGVDVTEAIRAKLAINRAR
SWARADNGAMRHIP

The query sequence (length=94) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 7ody:C 100 96 1.0000 0.9400 0.9792 8.27e-60 7ody:A, 7ody:B, 7ody:D
2 2q5z:B 94 92 0.2766 0.2766 0.2826 0.098 2q5z:A, 2q73:A, 2q73:B, 2q73:C, 2q73:D, 2q9l:A, 2q9l:B, 2q9l:C, 2q9l:D
3 6sqw:A 114 34 0.1489 0.1228 0.4118 0.23 2oig:B, 2oig:A, 2oig:D, 6sqw:D, 6sqy:A, 6sqy:D, 6sqz:A, 6sqz:D
4 7mu5:A 110 34 0.1596 0.1364 0.4412 0.65 7mu5:E, 7mu5:B, 7mu5:H, 7mu5:C, 7mu5:D, 7mu5:F, 7mu5:G
5 5iit:C 357 62 0.2234 0.0588 0.3387 2.6 3iid:A, 3iif:A, 3iif:B, 3iif:C, 5iit:B
6 7xn7:m 1187 17 0.0957 0.0076 0.5294 5.6 7xse:m, 7xsx:m, 7xsz:m, 7xt7:m, 7xtd:m, 7xti:m
7 6ax9:A 340 58 0.2021 0.0559 0.3276 5.9 6axm:A, 6axn:A, 6axu:A, 3kb9:A, 7kj8:A, 7kj9:A, 7kjd:A, 7kje:A, 7kjf:A, 7kjg:A, 3lg5:A, 4ltz:A, 4luu:A, 4lxw:A, 4lz0:A, 4lz3:A, 4lzc:A, 6ofv:A, 8su1:A, 8su2:A, 8su3:A, 8su4:A, 8su5:A, 8v3k:A
8 6nu8:A 488 39 0.1809 0.0348 0.4359 8.0
9 5kd6:A 400 58 0.2340 0.0550 0.3793 8.0 5kcl:A, 5kcl:B, 5kcq:A, 5kcq:B, 5kcy:A, 5kcy:B, 5kd0:A, 5kd0:B, 5kd6:B, 5kda:A, 5kda:B
10 2xsj:B 385 36 0.1170 0.0286 0.3056 8.5 2xsj:E
11 8ip0:A 212 24 0.0957 0.0425 0.3750 8.7 8h67:A, 8h7q:A
12 6v9s:A 503 24 0.1277 0.0239 0.5000 9.8 4zj8:A, 4zjc:A

[Back]

Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218