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BioLiP
>protein
PATPYQEDIARYWNNEARPVNLRLGDVDGLYHHHYGIGAVDHAALGDPGYEARLIAELHRLESAQAEFLLDHLGPVGPGD
TLVDAGCGRGGSMVMAHQRFGCKVEGVTLSAAQAEFGNRRARELGIDDHVRSRVCNMLDTPFEKGTVAASWNNESSMYVD
LHDVFAEHSRFLRVGGRYVTVTGCWNPRYGQPSKWVSQINAHFECNIHSRREYLRAMADNRLVPQTVVDLTPETLPYWEL
RATSSLVTGIEEAFIESYRDGSFQYVLIAADRV

The query sequence (length=273) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 4f86:A 275 275 0.9963 0.9891 0.9891 0.0 4f84:A, 4f86:B, 4f86:C, 4f86:E, 4f86:F, 4f86:H, 4f86:I, 4f86:J, 4f86:K, 4f86:L
2 3vc1:D 288 276 0.9011 0.8542 0.8913 0.0 4f86:D, 4f86:G, 3vc1:A, 3vc1:B, 3vc1:C, 3vc1:E, 3vc1:F, 3vc1:G, 3vc1:H, 3vc1:I, 3vc1:J, 3vc1:K, 3vc1:L, 3vc2:A, 3vc2:B, 3vc2:C, 3vc2:D, 3vc2:E, 3vc2:F, 3vc2:G, 3vc2:H, 3vc2:I, 3vc2:J, 3vc2:K, 3vc2:L
3 7fbo:A 282 158 0.1758 0.1702 0.3038 5.99e-12 7fbh:B, 7fbh:C, 7fbo:B, 7fbo:C
4 5gm2:B 282 165 0.1465 0.1418 0.2424 5.07e-09 5gm1:A, 5gm1:B, 5gm1:C, 5gm1:D, 5gm1:E, 5gm1:F, 5gm1:G, 5gm1:H, 5gm1:I, 5gm1:J, 5gm1:K, 5gm1:L, 5gm1:M, 5gm1:N, 5gm1:O, 5gm1:P, 5gm1:Q, 5gm1:R, 5gm2:A, 5gm2:C, 5gm2:D, 5gm2:E, 5gm2:F, 5gm2:G, 5gm2:H, 5gm2:I, 5gm2:J, 5gm2:L, 5gm2:M, 5gm2:N, 5gm2:O, 5gm2:P, 5gm2:Q, 5gm2:R
5 7v6h:A 267 103 0.1209 0.1236 0.3204 9.53e-08 7v6h:B
6 3bus:A 251 102 0.1209 0.1315 0.3235 2.43e-07 3bus:B
7 5z9o:A 373 72 0.0952 0.0697 0.3611 3.84e-07 5z9o:B
8 6uv6:C 264 103 0.1209 0.1250 0.3204 6.82e-07 6uv6:A, 6uv6:B
9 3t7s:A 246 104 0.0952 0.1057 0.2500 7.83e-07 3t7s:B, 3t7s:C, 3t7s:D, 3t7t:A, 3t7t:B, 3t7t:C, 3t7t:D
10 3kkz:A 256 104 0.1136 0.1211 0.2981 1.86e-06 3kkz:B
11 7qos:A 352 63 0.0769 0.0597 0.3333 9.03e-06 7qos:B
12 5wp4:A 485 184 0.1429 0.0804 0.2120 1.95e-05
13 7lxi:A 279 77 0.0916 0.0896 0.3247 2.74e-05 7mcj:A, 7mcj:B
14 5gm2:K 267 165 0.1392 0.1423 0.2303 2.95e-05
15 4krh:A 430 133 0.1319 0.0837 0.2707 3.74e-05 4krh:B, 4kri:A, 4kri:B, 4kri:C
16 1tpy:A 285 95 0.1209 0.1158 0.3474 5.58e-05
17 5fcd:A 228 86 0.0806 0.0965 0.2558 7.40e-05 5fcd:B
18 4ine:A 431 152 0.1282 0.0812 0.2303 8.18e-05 4ine:B
19 1kpg:A 285 76 0.0952 0.0912 0.3421 9.04e-05 1kpg:B, 1kpg:C, 1kpg:D, 1kph:A, 1kph:B, 1kph:C, 1kph:D
20 5kok:A 348 56 0.0659 0.0517 0.3214 1.18e-04 5koc:A, 5koc:B, 5kok:B, 5kpc:A, 5kpc:B, 5kpg:A, 5kpg:B
21 7q2d:A 286 56 0.0879 0.0839 0.4286 1.42e-04 2fk8:A, 3ha3:A, 3ha5:A, 3ha7:A, 7q2b:A, 7q2c:A, 7q2e:A, 7q2f:A, 7q2g:A, 7q2h:A
22 6hp2:A 297 184 0.1429 0.1313 0.2120 1.69e-04
23 4pne:B 272 99 0.0952 0.0956 0.2626 3.71e-04 4pne:A
24 1l1e:A 272 76 0.0879 0.0882 0.3158 5.10e-04 1l1e:B
25 3sxj:A 245 104 0.0842 0.0939 0.2212 5.80e-04 3sxj:B, 3t0i:A, 3t0i:B
26 5wp5:A 463 110 0.0916 0.0540 0.2273 0.001 5wp5:B
27 3hem:A 291 65 0.0879 0.0825 0.3692 0.004 1kpi:A
28 6p3o:A 341 56 0.0659 0.0528 0.3214 0.005 6p3m:A, 6p3n:A
29 6ecx:A 283 52 0.0623 0.0601 0.3269 0.007 6ect:A
30 6gkv:A 351 50 0.0549 0.0427 0.3000 0.015 6gkv:B, 6gky:A, 6gky:B, 6gkz:A, 6gkz:B, 6gkz:C, 6gkz:D
31 6ecv:A 286 169 0.1612 0.1538 0.2604 0.016 6ecu:A, 6ecu:B, 6ecv:B, 6ecw:A, 6ecw:B
32 6bqc:A 348 69 0.0733 0.0575 0.2899 0.033
33 5je1:A 244 167 0.1538 0.1721 0.2515 0.035 5jdy:A, 5jdy:B, 5jdz:A, 5jdz:B, 5je0:A, 5je0:B, 5je1:B, 5je2:A, 5je2:B, 5je3:A, 5je3:B, 5je4:A, 5je4:B, 5je5:A
34 9fcx:A 214 125 0.1282 0.1636 0.2800 0.070 9fcd:A, 9fcl:A, 9fcq:A, 9fcs:A, 9fcs:B, 9fcu:A, 9fcu:B, 9fcu:C, 9fcu:D, 9fcx:B, 9fcy:A, 9fcy:B, 9fcy:C, 9fcy:D, 9fd3:A, 9g0k:A, 9g0k:B
35 5bxy:A 155 80 0.0696 0.1226 0.2375 0.14 5bxy:B
36 6mro:A 194 58 0.0769 0.1082 0.3621 0.20 8gdu:A
37 6kvm:B 179 34 0.0476 0.0726 0.3824 0.94
38 3cjt:A 254 115 0.1136 0.1220 0.2696 0.98 3cjq:A, 3cjq:D, 3cjq:G, 3cjr:A, 3cjt:C, 3cjt:E, 3cjt:G, 3cjt:I, 3cjt:K, 3cjt:M, 3cjt:O, 3egv:A, 2nxe:A, 2nxe:B, 2zbp:A, 2zbq:A, 2zbr:A
39 4iv8:A 245 145 0.0916 0.1020 0.1724 1.2 4iv8:B
40 2zfu:A 212 46 0.0549 0.0708 0.3261 2.1 2zfu:B
41 4mwz:B 265 106 0.0733 0.0755 0.1887 2.4 4iv0:A, 4iv0:B, 4mwz:A
42 4iok:A 557 63 0.0696 0.0341 0.3016 2.6 1fp7:A, 1fpm:A, 1fpm:B, 4iok:B, 4iol:A, 4iol:B, 4jjz:A, 4jjz:B, 4jki:A, 3qus:A, 3qus:B
43 6f5z:B 228 196 0.1868 0.2237 0.2602 2.8 6f5z:A
44 4x36:A 318 62 0.0623 0.0535 0.2742 3.5 2bml:B, 5ctv:A, 1h8g:A, 1h8g:B, 1hcx:A, 1hcx:B, 4ivv:A, 4iwt:A, 4iwt:B
45 1ri1:A 252 50 0.0513 0.0556 0.2800 3.5 2hv9:A, 1ri2:A, 1ri3:A, 1ri4:A, 1z3c:A
46 5fad:A 160 52 0.0549 0.0938 0.2885 4.7 5fa8:A
47 7z0q:D 176 30 0.0403 0.0625 0.3667 4.7
48 1d3u:B 201 31 0.0403 0.0547 0.3548 4.8 1ais:B
49 2wa2:A 223 41 0.0586 0.0717 0.3902 5.2
50 4ohn:A 246 40 0.0513 0.0569 0.3500 5.8
51 6qzh:A 744 66 0.0733 0.0269 0.3030 6.8 7a54:A, 7a54:B, 7a5x:A, 7a5x:B, 3h72:A, 3h72:B, 3h73:A, 3h73:B, 5kky:A, 5kky:B, 2vvz:A, 2vvz:B, 2ya5:A, 2ya5:B, 2ya6:A, 2ya6:B, 2ya7:A, 2ya7:B, 2ya7:C, 2ya7:D, 2ya8:A, 2ya8:B
52 3f2o:B 204 50 0.0513 0.0686 0.2800 6.9 3f2o:A, 2jk9:A
53 8cmb:B 194 29 0.0403 0.0567 0.3793 8.1 8cmh:B, 4fqx:B, 2fse:B, 2fse:D, 1fv1:B, 1fv1:E, 4gbx:B, 1h15:B, 1h15:E, 8pje:E, 4x5w:B, 7yx9:B, 1zgl:B, 1zgl:E
54 4k6m:A 888 29 0.0476 0.0146 0.4483 8.2 4hdg:A, 4hdg:B, 4hdh:A, 4hdh:B, 4k6m:B, 4mtp:A, 4mtp:B
55 4bxl:A 46 25 0.0403 0.2391 0.4400 8.4 4bxl:B, 5k5g:B, 5k5g:C, 2otk:E, 2otk:F
56 3mb5:A 255 116 0.0952 0.1020 0.2241 8.8 3lga:A, 3lga:B, 3lga:C, 3lga:D, 3lhd:C, 3lhd:A, 3lhd:B, 3lhd:D
57 1u2z:C 385 59 0.0623 0.0442 0.2881 9.1 7k6p:K, 7k6q:K, 1u2z:A, 1u2z:B
58 5bp7:A 249 53 0.0586 0.0643 0.3019 10.0 5bp7:B, 5bp7:C

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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