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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
PASGQPSNDKKNVLPDWAFGGFERPQGANPVISPIENTKFYCPMTQDYVAWESNDTFNPAATLHDGKIVVLYRAEDKSGV
GIGHRTSRLGYATSSDGIHFKREKTPVFYPDNDTQKKLEWPGGCEDPRIAVTAEGLYVMTYTQWNRHIPRLAIATSRNLK
DWTKHGPAFAKAYDGKFFNLGCKSGSILTEVVNGKQVIKKIDGKYFMYWGEEHVFAATSEDLVNWTPYVNTDGSLRKLFS
PRDGHFDSQLTECGPPAIYTPKGIVLLYNGKNSASRGDKRYTANVYAAGQALFDANDPTRFITRLDEPFFRPMDSFEKSG
QYVDGTVFIEGMVYYKDKWYLYYGCADSKVGMAIYNPKKPAAADPLPA

The query sequence (length=368) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 5a7v:A 368 368 1.0000 1.0000 1.0000 0.0 5a7v:B
2 3taw:A 349 339 0.6060 0.6390 0.6578 2.95e-169
3 7fir:C 304 353 0.2745 0.3322 0.2861 2.34e-29 7fip:A, 7fip:B, 7fip:C, 7fip:D, 7fiq:C, 7fiq:B, 7fiq:A, 7fiq:D, 7fir:A, 7fir:B, 7fir:D, 7fis:C, 7fis:B, 7fis:A, 7fis:D
4 5b0s:B 355 332 0.2337 0.2423 0.2590 7.50e-18 5b0q:A, 5b0q:B, 5b0r:A, 5b0r:B, 5b0s:A
5 4udg:B 321 351 0.2310 0.2648 0.2422 6.18e-12 4udg:A, 4udg:C, 4udg:D, 4udg:E, 4udg:F, 4udi:A, 4udi:B, 4udi:C, 4udi:D, 4udi:E, 4udi:F, 4udj:A, 4udj:B, 4udj:C, 4udj:D, 4udj:E, 4udj:F, 4udk:A, 4udk:B, 4udk:C, 4udk:D, 4udk:E, 4udk:F
6 5aye:A 335 319 0.2147 0.2358 0.2476 4.91e-11 5aye:B, 5aye:C, 5aye:D, 5aye:E, 5aye:F
7 5mui:A 352 114 0.0870 0.0909 0.2807 0.48 5muj:A
8 7px0:B 1253 52 0.0516 0.0152 0.3654 2.2 7px0:A, 7px0:C, 7px0:D
9 3bs1:A 103 41 0.0353 0.1262 0.3171 3.8 4xqj:A, 4xqj:D, 4xqn:A, 4xqn:J, 4xqn:D, 4xqn:G, 4xqq:B, 4xxe:A, 4xxe:D, 4xyq:A
10 2eq6:A 460 34 0.0326 0.0261 0.3529 4.1 2eq6:B, 2eq8:A, 2eq8:B, 2eq8:D, 2eq8:E, 2eq9:A, 2eq9:B, 2eq9:D, 2eq9:E, 2eq9:G, 2eq9:H, 2eq9:J, 2eq9:K
11 7rd1:S 175 40 0.0353 0.0743 0.3250 8.2
12 2d8l:A 363 55 0.0489 0.0496 0.3273 9.9 2gh4:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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