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BioLiP
>protein
PAQARPTVFRWTGGGKEVYLSGSFNNWSKLPLTRDHNNFVAILDLPEGEHQYKFFVDGQWTHDPSEPIVTSQLGTVNNII
QVKKTDFEVFDALMVDSQKHQEPYVCKRAPPILPPHLLQVILNKDTGISCDPALLPEPNHVMLNHLYALSIKDGVMVLSA
THRYKKKYVTTLLYKPI

The query sequence (length=177) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 7myj:D 187 187 0.9887 0.9358 0.9358 3.70e-126 6b1u:B, 6b1u:D, 8bik:B, 8bik:E, 6c9f:B, 6c9g:B, 6c9j:B, 4cfe:B, 4cfe:D, 4cff:B, 4cff:D, 5ezv:B, 5ezv:D, 5iso:B, 5iso:D, 7myj:B, 4yef:A, 4yef:B, 4yef:C, 4yef:D, 4yef:E, 4yef:F, 4yef:G, 1z0m:A, 1z0m:B, 1z0m:C, 1z0n:A, 1z0n:B, 1z0n:C, 4zhx:B, 4zhx:D
2 6c9h:B 168 177 0.9492 1.0000 0.9492 2.33e-122 6e4t:B, 6e4u:B, 6e4w:B, 5kq5:B, 4qfr:B, 4qfs:B, 5t5t:B, 5ufu:B
3 6b2e:B 193 178 0.8249 0.7565 0.8202 1.79e-105 4cfh:B, 4rer:B, 4yee:A, 4yee:G, 4yee:B, 4yee:C, 4yee:D, 4yee:N, 4yee:E, 4yee:F, 4yee:H, 4yee:I, 4yee:J, 4yee:K, 4yee:L, 4yee:M, 4yee:O, 4yee:P, 4yee:Q, 4yee:R
4 2qrd:D 92 57 0.1695 0.3261 0.5263 1.31e-14 2qr1:B, 2qr1:D, 2qrc:B, 2qrc:D, 2qrd:B
5 4pyh:A 293 73 0.1582 0.0956 0.3836 4.58e-08
6 8dl1:A 713 51 0.1017 0.0252 0.3529 0.068 8dge:A, 8dge:B, 8dge:C, 8dge:D, 8dl1:B, 8dl1:C, 8dl1:D, 8dl2:A, 8dl2:B, 8dl2:C, 8dl2:D
7 6xb3:A 234 77 0.1356 0.1026 0.3117 0.92 6xb3:B, 6xb3:C, 6xb3:D, 6xb3:E, 6xb3:F, 6xb3:G, 6xb3:H, 6xb3:I, 6xb3:J, 6xb3:K, 6xb3:L, 6xb3:M, 6xb3:N, 6xb3:O, 6xb3:P
8 8g6d:B 253 90 0.1186 0.0830 0.2333 3.7 8g6d:D, 8g6d:F, 8g6d:H, 8g6d:J, 8g6d:L, 4zxs:B, 4zxs:D
9 8umu:A 515 99 0.1356 0.0466 0.2424 3.8
10 7p43:B 690 44 0.0621 0.0159 0.2500 7.4 7p43:A
11 5avp:A 240 22 0.0565 0.0417 0.4545 9.2 5avp:B, 5avp:C, 5avp:D
12 2cdq:A 470 15 0.0565 0.0213 0.6667 9.8 2cdq:B
13 7esn:A 435 31 0.0678 0.0276 0.3871 10.0 7esk:A, 7esm:A, 8i4d:A, 7yqs:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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