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BioLiP
>protein
PAPNNYSLPSILGGRSCVKPSKPVYSMRGRNKMGGFDEDLQKTPGPGSYDVVDPAIYKNKSPMYSITGRNQLPCDSTRKP
GPGQHSPEKVTVNKRMAPKFSFGVPHSQYTTPLIIQS

The query sequence (length=117) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 8snb:5N 244 117 1.0000 0.4795 1.0000 4.05e-82 8snb:5F, 8snb:5G, 8snb:5H, 8snb:5J
2 8snb:5N 244 22 0.1026 0.0492 0.5455 0.20 8snb:5F, 8snb:5G, 8snb:5H, 8snb:5J
3 8snb:5N 244 102 0.2735 0.1311 0.3137 0.22 8snb:5F, 8snb:5G, 8snb:5H, 8snb:5J
4 6n9j:B 356 38 0.1368 0.0449 0.4211 0.35 6n9j:A
5 1to4:A 156 55 0.1624 0.1218 0.3455 4.6 1to4:B, 1to4:C, 1to4:D, 1to5:A, 1to5:B, 1to5:C, 1to5:D
6 6ea8:A 195 59 0.1624 0.0974 0.3220 4.9 6ea8:B, 6ea8:E, 6ea8:F, 6ea8:G, 6ea8:H, 6ea9:A, 6ea9:B, 6ea9:C, 6ea9:D, 6ea9:E, 8orv:A, 8p44:A, 8p44:B, 8p44:C, 8p44:D

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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