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BioLiP
>protein
PAPLTLIGLGPMGQAMGNALLDRGHGLTVWNRTASRADALVARGAVRAPTVAAAVAANELVVLSLTDYDAMYALLGPAAD
ALAGKVVVNLSSDTPEKTRAGARWIAEHGGTLIAGGVTCPPSGIGSPESSAFYSGPSAAFERHRETLRTLTRTDYRGEDP
GLAALWYQIGMVMWWNAMLGYLQAVALADANGLKAADILPHASDTVAGLPFFLRFYADRIDTGHHGGDADRLAMGTASVE
HILHTMADSGVDTALPEAVVALFRRGEAAGYAENSFSSMVELLKKPS

The query sequence (length=287) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 7y8m:B 288 286 0.9861 0.9826 0.9895 0.0 7y8l:A, 7y8l:B, 7y8l:C, 7y8l:D, 7y8m:A, 7y8m:C, 7y8m:D, 7y8n:A, 7y8n:B, 7y8o:A, 7y8o:B
2 4d3f:B 289 282 0.5645 0.5606 0.5745 2.79e-123
3 4oqy:A 268 281 0.5505 0.5896 0.5623 5.64e-113
4 8jyt:C 286 285 0.5993 0.6014 0.6035 2.73e-107 8jyt:A, 8jyt:B, 8jyt:D
5 8bk1:A 288 281 0.4878 0.4861 0.4982 3.92e-91 8bj5:A, 8bj5:B, 8bj5:C, 8bj5:D, 8bk1:B, 8bk1:C, 8bk1:D
6 8hwy:A 287 285 0.5610 0.5610 0.5649 1.28e-89 8hwy:B, 8jku:A, 8jku:B
7 6jiz:C 295 291 0.4460 0.4339 0.4399 5.19e-73 6jit:B, 6jit:C, 6jiz:B
8 8j43:A 285 284 0.3937 0.3965 0.3979 7.90e-68 8j43:B
9 5a9t:A 286 284 0.4111 0.4126 0.4155 7.58e-67 5a9s:A, 5a9s:B, 5fwn:A, 5fwn:B
10 7wnn:B 290 284 0.4216 0.4172 0.4261 1.04e-60 7wnn:A, 7wnw:B, 7wnw:A
11 8j44:A 293 289 0.4042 0.3959 0.4014 6.75e-59 8j44:B, 8whg:B, 8whg:E, 8whg:F
12 7og3:A 290 294 0.3693 0.3655 0.3605 6.71e-58 7og3:B
13 7osn:B 291 287 0.3589 0.3540 0.3589 3.71e-57 7osn:A, 7osn:C, 7osn:D, 7osn:E, 7osn:F
14 3zhb:D 294 284 0.3833 0.3741 0.3873 2.38e-53 3zhb:A, 3zhb:B, 3zhb:C
15 5ocm:A 290 285 0.3624 0.3586 0.3649 5.90e-52 5ocm:F, 5ocm:B, 5ocm:C, 5ocm:D, 5ocm:E
16 6smt:B 289 276 0.3693 0.3668 0.3841 2.13e-51 6smt:A, 6smt:C, 6smt:D, 6smt:E
17 8u05:B 290 287 0.3589 0.3552 0.3589 1.82e-43 8u05:A, 8u06:A, 8u06:B, 8u07:A, 8u07:B
18 8p2j:C 293 287 0.3171 0.3106 0.3171 1.23e-40 8ozv:A, 8ozw:A, 8ozw:B, 8p2j:A, 8p2j:B, 8p2j:D, 8p2j:E, 8p2j:F, 8p2j:G, 8p2j:H, 8p2j:I
19 5g6r:B 289 283 0.2997 0.2976 0.3039 2.39e-36 5g6r:A, 5g6s:A, 5g6s:G, 5g6s:B, 5g6s:C, 5g6s:D, 5g6s:F, 5g6s:E, 5g6s:H
20 8qhe:A 284 285 0.2753 0.2782 0.2772 4.96e-36 6sle:A, 6sle:C, 6sle:H, 6sle:D, 6sle:E, 6sle:F, 6sle:G
21 8a3x:A 295 289 0.2962 0.2881 0.2941 1.20e-34 8a3x:B, 8a3x:C, 8a3x:D, 8a5z:A, 8a5z:B
22 7xr5:A 289 288 0.3798 0.3772 0.3785 6.43e-34 7xr5:B, 7xr5:C, 7xr5:D
23 6toe:B 293 290 0.3066 0.3003 0.3034 4.05e-32 6to4:A, 6to4:D, 6to4:B, 6to4:C, 6toe:A, 6toe:F, 6toe:C
24 7a3w:B 293 285 0.2787 0.2730 0.2807 2.30e-31 7a3w:A
25 6eoi:B 287 283 0.3031 0.3031 0.3074 8.00e-30 6eod:A, 6eod:H, 6eod:B, 6eod:G, 6eod:C, 6eod:D, 6eoh:A, 6eoh:B, 6eoi:A, 6h7p:A, 6h7p:B, 5ojl:A
26 6sle:B 261 283 0.2613 0.2874 0.2650 3.20e-21
27 2uyy:A 292 117 0.1289 0.1267 0.3162 2.79e-08 2uyy:D
28 5u5g:A 286 167 0.1812 0.1818 0.3114 2.78e-07 5u5g:B, 5u5g:C, 5u5g:D
29 3w6z:A 296 206 0.1916 0.1858 0.2670 6.62e-07 3w6u:A, 3ws7:A, 5xvh:A
30 3pef:A 287 62 0.0871 0.0871 0.4032 7.19e-06 3pef:B, 3pef:C, 3pef:D, 3pef:E, 3pef:F, 3pef:G, 3pef:H
31 6smz:C 295 105 0.1185 0.1153 0.3238 1.26e-04 6smy:A, 6smy:B, 6smy:C, 6smy:D, 6smz:A, 6smz:B, 6smz:D
32 3pdu:A 287 126 0.1289 0.1289 0.2937 1.68e-04 3pdu:B, 3pdu:C, 3pdu:D, 3pdu:F, 3pdu:E, 3pdu:G, 3pdu:H
33 3obb:A 295 213 0.1916 0.1864 0.2582 0.002 3q3c:A
34 2yjz:A 174 112 0.0941 0.1552 0.2411 0.008 2yjz:B, 2yjz:C, 2yjz:D
35 5n2i:A 225 89 0.1010 0.1289 0.3258 0.024 5n2i:B, 5n2i:C, 5n2i:D
36 2jkv:A 482 60 0.0732 0.0436 0.3500 0.038 2jkv:B, 2jkv:C, 2jkv:D, 2jkv:E, 2jkv:F, 1pgn:A, 1pgo:A, 1pgp:A, 1pgq:A, 5uq9:E, 5uq9:F
37 6fqy:A 468 56 0.0592 0.0363 0.3036 0.13 6fqy:B, 6fqz:A, 6fqz:B
38 3dtt:B 222 99 0.1045 0.1351 0.3030 0.14 3dtt:A
39 7cb5:B 467 57 0.0592 0.0364 0.2982 0.15 7cb2:A, 7cb2:B, 7cb2:C, 7cb2:D, 7cb5:A, 7cb5:C, 7cb5:D
40 2p4q:A 476 86 0.0836 0.0504 0.2791 0.15
41 2vq3:A 181 92 0.0767 0.1215 0.2391 0.17 2vq3:B
42 2raf:A 190 89 0.0836 0.1263 0.2697 0.29
43 8i4q:A 479 154 0.1220 0.0731 0.2273 0.57 8i4q:B
44 1gpj:A 399 62 0.0801 0.0576 0.3710 1.2
45 2i9p:B 296 129 0.1045 0.1014 0.2326 2.4 2i9p:A, 2i9p:C, 2i9p:D
46 2w90:B 471 128 0.1045 0.0637 0.2344 2.5 2w8z:A, 2w8z:B, 2w90:A
47 8c79:A 478 33 0.0418 0.0251 0.3636 3.8 8c79:B
48 4e1k:A 450 76 0.0836 0.0533 0.3158 3.9 4knr:A, 4knx:A, 4kpx:A, 4kpz:A, 4kql:A, 2v0i:A, 2v0j:A, 2v0k:A, 2v0l:A, 2vd4:A, 2w0v:A, 2w0w:A
49 3fwn:A 467 128 0.1010 0.0621 0.2266 4.2 3fwn:B, 2zya:A, 2zya:B, 2zyd:A, 2zyd:B
50 2iz1:B 471 133 0.1080 0.0658 0.2331 6.3 2iyo:A, 2iyp:A, 2iyp:B, 2iyp:C, 2iz0:A, 2iz0:B, 2iz0:C, 2iz1:A, 2iz1:C
51 5ief:A 858 55 0.0592 0.0198 0.3091 6.5 5h9o:A, 5h9o:C, 5hjo:A, 5hjo:C, 5hjr:A, 5hjr:C, 5ied:A, 5iee:A, 5ieg:A, 7jty:A, 7jty:C, 7k9n:A, 7k9n:C, 7k9o:A, 7k9o:C, 7k9q:A, 7k9q:C, 7k9t:A, 7k9t:C, 7kad:A, 7kad:C, 7kb6:A, 7kb6:C, 7kb8:A, 7kb8:C, 7kbj:A, 7kbj:C, 7kbr:A, 7kbr:C, 7kry:A, 7kry:C
52 3iup:A 376 112 0.0906 0.0691 0.2321 6.9 3iup:B
53 7mfm:I 490 41 0.0557 0.0327 0.3902 8.2 7mfm:J, 7mft:I
54 5t9f:B 253 28 0.0314 0.0356 0.3214 8.2 5t95:A, 5t95:B, 5t9e:A, 5t9e:B, 5t9f:A, 5whx:A, 5whx:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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