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BioLiP
>protein
PALPPGWKKEEVIRKSGLSAGKSDVYYFSPSGKKFRSKPQLARYLGNTVDLSSFDFRT

The query sequence (length=58) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 7mwm:A 74 58 0.9828 0.7703 0.9828 4.16e-37 6c1a:A, 6c1a:B, 6c1a:E, 6c1a:F, 6c1t:A, 6c1t:D, 6c1u:A, 6c1u:B, 6c1u:E, 6c1u:F, 6c1v:A, 6c1v:B, 6c1v:E, 6c1v:F, 6c2f:A, 6c2f:D, 6c2f:G, 6c2f:J, 6c2f:M, 6c2f:P, 6cnp:A, 6cnp:B, 6cnq:A, 6cnq:B, 7mwk:A, 7mwk:B, 7mwm:B, 7ray:A
2 2ky8:A 70 58 0.9655 0.8000 0.9655 1.91e-36
3 6ccg:A 72 58 0.7759 0.6250 0.7759 2.70e-29 6cc8:A, 6cc8:B, 6ccg:B, 6ceu:A, 6ceu:B, 6cev:A, 6cev:B
4 1ig4:A 75 57 0.5862 0.4533 0.5965 2.52e-20 6d1t:A
5 6ogj:B 82 60 0.5345 0.3780 0.5167 6.31e-12 5bt2:A, 6c1y:A, 6c1y:B, 3c2i:A, 6ogj:A, 6ogk:A, 6yww:A
6 7fef:A 48 44 0.3966 0.4792 0.5227 1.17e-10
7 3vxv:A 65 43 0.4138 0.3692 0.5581 2.88e-09 3vxx:A, 3vyb:A, 3vyq:A, 3vyq:D
8 2moe:A 71 59 0.4483 0.3662 0.4407 6.63e-09 4lg7:A
9 7fhj:B 107 47 0.2586 0.1402 0.3191 7.87e-04 7mwh:B, 7mwl:B
10 2lvh:A 45 24 0.2069 0.2667 0.5000 0.54
11 7s7b:F 352 28 0.2414 0.0398 0.5000 0.86 7s7b:B, 7s7c:B
12 5ktc:A 187 29 0.1897 0.0588 0.3793 2.0 5ktd:A
13 7d41:A 367 36 0.2414 0.0381 0.3889 3.0 7d41:B
14 4coy:A 232 41 0.2241 0.0560 0.3171 4.4 4cou:A, 4cov:A, 4cow:A, 4coz:A
15 5a0y:F 248 24 0.1724 0.0403 0.4167 4.5 5a0y:C, 5a8k:C, 5a8k:F, 7b2h:C, 7b2h:F, 5g0r:F, 5g0r:C, 1hbm:C, 1hbm:F, 1hbn:C, 1hbn:F, 1hbo:C, 1hbo:F, 1hbu:C, 1hbu:F, 3m1v:F, 3m1v:C, 3m2r:F, 3m2r:C, 3m2u:F, 3m2u:C, 3m2v:F, 3m2v:C, 3m30:F, 3m30:C, 3m32:F, 3m32:C, 1mro:F, 1mro:C, 3pot:F, 3pot:C, 7suc:c, 7suc:C, 7sxm:F, 7sxm:C
16 3kfu:F 447 35 0.2069 0.0268 0.3429 5.7 3kfu:I
17 7jzw:A 427 52 0.2759 0.0375 0.3077 6.5 6b44:A, 6b45:A, 6b47:A, 6b48:A, 7ecv:A, 7ecw:A, 7elm:A, 7elm:K, 7eln:A, 7eln:X, 7eqg:B, 7jzx:A, 7jzy:A, 7jzz:A, 6ne0:A, 7t3j:A, 7t3k:A, 7t3k:a, 7t3l:A, 7t3l:a, 7taw:A, 7taw:a, 7tax:A, 5uz9:A, 6vqv:C, 6vqw:B, 6vqx:B, 7we6:A, 7we6:X, 6whi:A, 7yhs:A
18 6d50:B 840 27 0.1897 0.0131 0.4074 7.9 6d50:A, 6nzg:A, 6nzg:B, 5uj6:A, 5uj6:B
19 4qez:B 231 39 0.1897 0.0476 0.2821 8.0 4qez:A, 4qez:C
20 6ob5:D 151 22 0.1724 0.0662 0.4545 8.3
21 4v61:BN 176 39 0.2241 0.0739 0.3333 8.7

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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