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BioLiP
>protein
PALNARQQALLTALNACGDEMSGQQLHRSLDDEASMGLATVYRNLRQLQQRGLVRCRHLPTGEALYAPVDRDRHHLTCVD
CGTTQVLDHCPIHGIDVPAGDFELLFHTLEFFGFCSSCRP

The query sequence (length=120) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 7ne9:AAA 120 120 1.0000 1.0000 1.0000 2.32e-86 7ne9:BBB, 7ne9:CCC, 7ne9:DDD
2 2o03:A 129 122 0.3917 0.3643 0.3852 9.04e-15
3 7vo0:G 131 121 0.3167 0.2901 0.3140 1.08e-07 3mwm:A, 3mwm:B, 7vo0:H, 7vo0:K, 7vo0:L, 7vo0:N, 7vo0:M, 7vo9:G, 7vo9:H, 7vo9:M, 7vo9:N, 7vpd:M, 7vpd:N, 7vpz:M, 7vpz:N, 7x74:G, 7x74:H, 7x74:M, 7x74:N, 7x75:G, 7x75:H, 7x75:K, 7x75:L, 7x75:M, 7x75:N, 7x76:G, 7x76:H, 7x76:M, 7x76:N
4 2fe3:B 143 122 0.2583 0.2168 0.2541 1.33e-07 3f8n:A, 3f8n:B, 2fe3:A, 2rgv:A, 2rgv:B
5 2w57:A 131 64 0.2000 0.1832 0.3750 6.75e-07 2w57:B
6 5nhk:B 132 90 0.2083 0.1894 0.2778 3.93e-06 5nbc:A, 5nbc:B, 5nbc:C, 5nbc:D, 5nhk:A, 5nhk:C, 5nhk:D
7 8j6w:A 145 108 0.2750 0.2276 0.3056 6.18e-06
8 6h1c:B 134 66 0.2000 0.1791 0.3636 9.95e-06 6h1c:A, 1mzb:A
9 6dk4:A 135 48 0.1500 0.1333 0.3750 9.77e-05 6dk4:B
10 6d57:B 151 95 0.1833 0.1457 0.2316 0.005 6d57:A, 4ets:A, 4ets:B
11 5fd6:A 135 116 0.2167 0.1926 0.2241 0.009 5fd6:B, 5fd6:C, 5fd6:D
12 5nl9:A 146 50 0.1250 0.1027 0.3000 0.13 5nl9:B
13 4rb3:C 136 115 0.2083 0.1838 0.2174 0.18 4raz:A, 4raz:B, 4rb1:A, 4rb1:B, 4rb2:C, 4rb2:D, 4rb3:D
14 4lmy:B 157 124 0.2167 0.1656 0.2097 0.22 4i7h:A, 4i7h:B, 4lmy:A
15 3eyy:A 133 80 0.2167 0.1955 0.3250 0.37 3eyy:B
16 8urb:A 921 50 0.1333 0.0174 0.3200 2.4 8g6r:A
17 3og2:A 986 21 0.0917 0.0112 0.5238 4.0 3ogr:A, 3ogs:A, 3ogv:A
18 7k1k:A 3604 28 0.1000 0.0033 0.4286 4.4 7k1b:A
19 7k0y:A 3669 28 0.1000 0.0033 0.4286 4.6
20 7k1j:A 3584 28 0.1000 0.0033 0.4286 4.6 7k19:A
21 7k1n:A 3634 28 0.1000 0.0033 0.4286 4.6 7z88:A
22 7k17:B 3645 28 0.1000 0.0033 0.4286 4.6 7k17:A
23 7su3:A 3802 28 0.1000 0.0032 0.4286 4.6
24 5y3r:C 3636 28 0.1000 0.0033 0.4286 4.6
25 7otm:A 3656 28 0.1000 0.0033 0.4286 4.6 7otp:A, 7otv:A, 7otw:A, 7oty:A
26 7z87:A 3689 28 0.1000 0.0033 0.4286 4.6
27 7nfc:A 3562 28 0.1000 0.0034 0.4286 4.7 8bh3:S, 8bh3:A, 8bhv:A, 8bhv:F, 8bhy:A, 8bhy:S, 8bot:F, 8bot:S, 7nfc:F
28 8ez9:L 3662 28 0.1000 0.0033 0.4286 4.7 8ez9:C
29 6zha:A 3707 28 0.1000 0.0032 0.4286 4.7 6zh8:A
30 8eza:L 3720 28 0.1000 0.0032 0.4286 4.7 8eza:C, 7lt3:C, 7lt3:L
31 6zhe:F 3731 28 0.1000 0.0032 0.4286 4.7
32 7sud:A 3740 28 0.1000 0.0032 0.4286 4.7
33 6zhe:A 3768 28 0.1000 0.0032 0.4286 4.7
34 7sgl:A 3852 28 0.1000 0.0031 0.4286 4.7
35 8ezb:C 3724 28 0.1000 0.0032 0.4286 4.9 8ezb:L
36 4wci:C 63 24 0.0667 0.1270 0.3333 5.7 2j6f:A, 2j6o:A, 2j7i:A, 2j7i:B, 4wci:A, 4wci:E
37 6vz8:F 159 28 0.0917 0.0692 0.3929 6.3 6vz8:J, 6vz8:N, 6vz8:R
38 8wnf:A 918 22 0.0750 0.0098 0.4091 6.4 8wng:A, 8wni:A, 8wnj:A, 8wo2:A, 8wo3:A
39 4cob:A 206 16 0.0917 0.0534 0.6875 6.7 4cob:B
40 6knb:B 1120 28 0.1167 0.0125 0.5000 6.9 6knc:B
41 8rpx:D 168 26 0.0833 0.0595 0.3846 8.3 8q5n:A, 8q5n:B, 8rpx:A, 8rpx:B, 8rpx:C, 8rpx:E
42 2fja:A 642 45 0.1333 0.0249 0.3556 9.3 2fja:C, 2fjb:A, 2fjb:C, 2fjd:A, 2fjd:C, 2fje:A, 2fje:C, 1jnr:A, 1jnr:C, 1jnz:A, 1jnz:C

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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