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BioLiP
>protein
PALAQVAVFPALSGQTLVVYSSLDEPLATPMIEGFQKANPDIAVHYEDMLTGEIYDRIVKETDAGKKTADFAFSSAMDLQ
VKLSNDGYAQRSDLAMSARWPAWANWRNTAYALTFEPAVFVYHKPSFTTEKPPATRAEFVDYLERHAKEVHGRIATYDIE
RGVGFLFMSRDQEQFGDIWSVIKAMGAAGVKVYSTSSAILERVSDGRFVLGYNILGSYAADWASRHPDVGIVLPKDYTVV
MSRIGLVPEAAANPELGRRYLEFFMSKEGQTIMARQLQIPAVSPEVAGENTANTMQAIHGAQLRPVPVSPGLMVYLDQVK
RSRLIERWNEALRS

The query sequence (length=334) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 3c9h:B 339 338 0.9970 0.9823 0.9852 0.0 3c9h:A
2 7f6e:B 341 320 0.3533 0.3460 0.3688 1.07e-60 7f6e:A, 7f6e:C, 7f6f:A, 7f6f:B, 7f6n:A, 7f6n:B, 7f6n:C, 7f6o:A, 7f6o:B, 7f6q:A, 7f6r:A, 7f6s:A, 7f6u:A
3 2onr:A 314 67 0.0659 0.0701 0.3284 0.38 3cij:A, 3cij:B, 2onk:E, 2onk:J, 2ons:A
4 4by6:A 508 84 0.0689 0.0453 0.2738 1.9 4by6:D
5 6mi7:F 217 105 0.0838 0.1290 0.2667 3.0
6 6dmh:A 270 51 0.0569 0.0704 0.3725 4.5 4euz:A, 4ev4:A
7 2huf:A 385 88 0.0749 0.0649 0.2841 4.8 2huf:B, 2hui:A, 2hui:B, 2huu:A, 2huu:B
8 8j4h:A 309 198 0.1257 0.1359 0.2121 5.6 8j4j:A
9 3j79:G 124 78 0.0659 0.1774 0.2821 6.9 3jbn:AG, 3jbo:AG, 3jbp:AG, 8tpu:AG, 5umd:G
10 5t1p:D 328 45 0.0329 0.0335 0.2444 7.3 5t1p:A, 5t1p:B, 5t1p:C
11 5l4g:M 415 59 0.0629 0.0506 0.3559 7.4 5m32:g, 6msd:F, 6mse:F, 7qxw:F, 5t0c:AF, 5t0c:BF, 5t0g:F, 5t0h:F, 5t0i:F, 5t0j:F, 7w38:F, 7w39:F, 7w3a:F, 7w3i:F, 7w3j:F, 7w3k:F, 6wjd:F
12 6msg:F 395 59 0.0629 0.0532 0.3559 8.3 8cvt:F, 5gjq:M, 5gjr:M, 5gjr:0, 6msb:F, 6msh:F, 6msk:F, 7qxn:F, 7qxp:F, 7qxu:F, 7qxx:F, 7qya:F, 7qyb:F, 5vfp:F, 5vfq:F, 5vfr:F, 5vfs:F, 7w37:F, 7w3b:F, 7w3c:F, 7w3g:F, 7w3h:F, 7w3m:F, 6wjn:F
13 5x49:A 441 55 0.0599 0.0454 0.3636 8.6 5x49:B
14 3fir:A 231 57 0.0449 0.0649 0.2632 9.4 3fir:B, 3fj7:A, 3fj7:B, 3fjm:A, 3fjm:B, 2hxw:A, 2hxw:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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