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BioLiP
>protein
PAEQVHLSGPTMGTTYNIKYIQQPGIADSKTLQTEIDRLLEEVNDQMSTYRKDSELSRFNQHTSSEPFAVSTQTLTVVKE
AIRLNGLTEGALDVTVGPLVNLWGFGPEARPDVVPTDEELNARRAITGIEHLTIEGNTLSKDIPELYVDLSTIAKGWGVD
VVADYLQSQGIENYMVEIGGEIRLKGLNRDGVPWRIAIEKPSVDQRSVQEIIEPGDYAIATSGDYRQDGVRYSHIIDPTT
GRPINNRVVSVTVLDKSCMTADGLATGLMVMGEERGMAVAEANQIPVLMIVKTDDGFKEYASSSFKPFL

The query sequence (length=309) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 6nxi:A 309 309 1.0000 1.0000 1.0000 0.0 6nxj:A, 6nxj:B
2 3pnd:C 323 320 0.4563 0.4365 0.4406 6.19e-88 3pnd:A, 3pnd:B, 3pnd:D
3 5mgy:H 316 305 0.4239 0.4146 0.4295 2.92e-86 5mgy:B, 5mgy:G, 5mgy:A, 5mgy:C, 5mgy:D, 5mgy:F
4 2o18:C 313 313 0.4369 0.4313 0.4313 9.16e-86 2o18:A, 2o18:B, 2o18:D, 4xgv:A, 4xgv:B, 4xgv:C, 4xgv:D, 4xgw:A, 4xgw:B, 4xgw:C, 4xgw:D, 4xgx:B
5 4xgx:A 290 309 0.3948 0.4207 0.3948 1.37e-70
6 7esa:A 322 241 0.2201 0.2112 0.2822 7.06e-29 7esb:A, 7esc:A, 7f2u:A, 7f2u:B
7 4ifu:A 330 282 0.2589 0.2424 0.2837 2.13e-27 4ifw:A, 4ifx:A, 4ifz:A, 4ig1:A, 7mgt:A, 4xdr:A, 4xdt:A, 4xdu:A
8 2bhz:A 589 96 0.0744 0.0390 0.2396 1.7 2bhy:A, 2bxy:A, 2bxz:A, 2by0:A, 2by1:A, 2by2:A, 2by3:A
9 7x7i:A 583 77 0.0744 0.0395 0.2987 1.9 7x7i:B, 7x7j:A, 7x7j:B, 7x7k:A, 7x7k:B
10 2btq:A 436 35 0.0421 0.0298 0.3714 2.1 2bto:A, 2bto:B, 5o09:1A, 5o09:2A, 5o09:3A, 5o09:4A, 5o09:5A, 5o09:6A, 5o09:7A, 5o09:8A, 7quq:A, 7quq:C, 7quq:E
11 1vdd:A 199 100 0.0939 0.1457 0.2900 2.4 4jcv:A, 4jcv:B, 2v1c:A, 2v1c:B, 1vdd:B, 1vdd:C, 1vdd:D
12 2xq1:B 494 64 0.0647 0.0405 0.3125 2.8 2xq1:C, 2xq1:D, 2xq1:E, 2xq1:F, 2xq1:G, 2xq1:H, 2xq1:I, 2xq1:J, 2xq1:K, 2xq1:L, 2xq1:M, 2xq1:N, 2xq1:O, 2xq1:P
13 5n80:A 358 123 0.0809 0.0698 0.2033 5.3 6y6i:A
14 2aa1:B 146 72 0.0615 0.1301 0.2639 5.7 2aa1:D
15 6sl1:A 2652 50 0.0583 0.0068 0.3600 6.0 6sky:A, 6sky:B
16 6skz:A 2638 50 0.0583 0.0068 0.3600 6.2 6sl0:A, 6sl0:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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