Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
PADALPGEGAVREVLRPLLKQAAEKTAAGKIVFAEAATGTGKGRMIASLAAAAAIKGDTVVVSAPLAVTWQLVNDMKDIP
EVRRVGLTLSLGRPNFISPQRTLEWAIDNERADLAAWIEGGGKPLSLRSMETSKVISHELCWLLEDALLLAEDLPADSLL
LTSEDPADCPAQQLYVAMRSNYTEAGIILCSHFMLAAHTRMMQMRLSLPHFIDTLIVDEAHLLEQAFASVYTHTLRLRPL
MRTIEGLDALKELFTQMQVATNTSLNVPLSDVPELIPALKDTVKTLGALPTKGMSRDARSVIRIATRAANDALSGHSRLR
IEVTPVHSYPMLLSGRSNLQRALLGLWNATGGATLVSATLFTTGDNGSLTRWKLEVPTERAAFLPPVHPAWTTAPVLLHK
EFCAHEPDDSPEWATECAQTIQGVASTAQGGTLVLCTSYQNTELLAGRLGAALGDRLIVQSKTSSAATCLAQFKAKHKAG
IRPVWLGLGAAWTGIDLSDHSLPDNPELDRLLSDLVITRIPVGQNRSLTHERRTAIGGFRIISQEAAWHFRQGLGRLVRR
PGVTHKNLWVLDARIYGGAAWVAPFRQILDRYKK

The query sequence (length=594) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 7xf0:C 598 606 0.9848 0.9783 0.9653 0.0 7xf0:A, 7xf0:B, 7xf1:A, 7xg3:L, 7xg4:L
2 5xy3:p 89 51 0.0219 0.1461 0.2549 0.63
3 3gfx:B 394 69 0.0320 0.0482 0.2754 1.6 3gfx:A, 3gfz:A, 3gfz:B, 3gg0:A, 3gg0:B, 3gg1:A, 3gg1:B, 2kb2:A
4 2oui:A 360 127 0.0572 0.0944 0.2677 2.1 2oui:B, 2oui:C, 2oui:D, 1y9a:A, 1y9a:C
5 8v08:A 392 34 0.0303 0.0459 0.5294 2.4 8v08:B
6 8blu:B 195 28 0.0253 0.0769 0.5357 3.2 5a2p:A, 5a2p:B, 5a2p:D, 5a2p:C, 8aai:A, 8aai:B, 8aai:C, 8aai:D, 8aak:A, 8aak:B, 8aao:A, 8aao:B, 8aap:A, 8aap:B, 6ak2:A, 6ak2:B, 8blu:C, 8blu:D, 8blv:A, 8blv:B, 7fsg:B, 7fsg:C, 7fsg:D, 7fsh:B, 7fsh:C, 7fsh:D, 7fsi:B, 7fsi:C, 7fsi:D, 7fsj:A, 7fsj:B, 7fsj:C, 7fsj:D, 7fsk:B, 7fsk:C, 7fsk:D, 7fsl:A, 7fsl:B, 7fsl:C, 7fsl:D, 7fsm:A, 7fsm:B, 7fsm:C, 7fsm:D, 7fsn:A, 7fsn:B, 7fsn:C, 7fsn:D, 7fso:B, 7fso:C, 7fso:D, 7fsp:B, 7fsp:C, 7fsp:D, 7fsq:B, 7fsq:A, 7fsq:C, 7fsq:D, 7fsr:B, 7fsr:C, 7fsr:D, 7fss:A, 7fss:B, 7fss:C, 7fss:D, 7fst:B, 7fst:C, 7fst:D, 7fsu:B, 7fsu:C, 7fsu:D, 7fsv:A, 7fsv:B, 7fsv:C, 7fsv:D, 7fsw:A, 7fsw:B, 7fsw:C, 7fsw:D, 7fsx:B, 7fsx:C, 7fsx:D, 7fsy:A, 7fsy:B, 7fsy:C, 7fsy:D, 7fsz:B, 7fsz:C, 7fsz:D, 7ft0:B, 7ft0:C, 7ft0:D, 7ft1:B, 7ft1:C, 7ft1:D, 7ft2:B, 7ft2:C, 7ft2:D, 7ft3:B, 7ft3:A, 7ft3:C, 7ft3:D, 7ft4:A, 7ft4:B, 7ft4:C, 7ft4:D, 7ft5:A, 7ft5:B, 7ft5:C, 7ft5:D, 7ft6:B, 7ft6:C, 7ft6:D, 7ft7:A, 7ft7:B, 7ft7:C, 7ft7:D, 7ft8:B, 7ft8:C, 7ft8:D, 7ft9:B, 7ft9:C, 7ft9:D, 7fta:B, 7fta:C, 7fta:D, 7ftb:B, 7ftb:C, 7ftb:D, 7ftc:B, 7ftc:C, 7ftc:D, 7ftd:A, 7ftd:C, 7ftd:B, 7ftd:D, 5g1d:B, 5g1d:A, 8hck:A, 8hu2:A, 1obx:A, 1oby:A, 1oby:B, 1obz:A, 6r9h:A, 6r9h:C, 6rlc:A, 6rlc:B, 6rlc:C, 6rlc:D, 1v1t:B, 1v1t:A, 1w9e:A, 1w9e:B, 1w9o:B, 1w9o:A, 1w9q:B, 1ybo:A, 1ybo:B, 4z33:A, 4z33:B
7 3tvq:A 152 30 0.0185 0.0724 0.3667 4.6
8 4b7x:B 331 80 0.0337 0.0604 0.2500 4.9 4b7x:A, 4b7x:C, 4b7x:D, 4b7x:E, 4b7x:F, 4b7x:G, 4b7x:H, 4b7x:I, 4b7x:J, 4b7x:L
9 6e4v:A 672 53 0.0337 0.0298 0.3774 6.9
10 7rx0:C 328 73 0.0337 0.0610 0.2740 7.4 6mlq:C, 6mlr:C
11 1gl6:B 420 95 0.0404 0.0571 0.2526 7.8 1gki:A, 1gki:B, 1gki:D, 1gki:E, 1gki:F, 1gki:G, 1gl6:A, 1gl6:D, 1gl6:E, 1gl6:F, 1gl6:G, 1gl7:A, 1gl7:B, 1gl7:D, 1gl7:E, 1gl7:F, 1gl7:G
12 6khm:K 312 55 0.0303 0.0577 0.3273 9.1 6khl:A, 6khl:B, 6khm:A, 6khm:B, 6khm:C, 6khm:D, 6khm:E, 6khm:F, 6khm:G, 6khm:H, 6khm:I, 6khm:J, 6khm:L, 6khm:M, 6khm:N, 6khm:O, 6khm:P, 6khm:Q, 6khm:R, 6khm:S, 6khm:T, 6khm:U, 6khm:V, 6khm:X, 6khm:Y, 6khm:W, 6khm:Z
13 2qe6:A 266 44 0.0269 0.0602 0.3636 10.0 2qe6:B

[Back]

Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218