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BioLiP
>protein
NYYDRSVSPVEYAYFDQSQNMRAINWNKIVDEKDLEVWNRVTQNFWLPENIPVSNDLPSWNELDDDWQQLITRTFTGLTL
LDTVQSSIGDVAQIKNSLTEQEQVIYANFAFMVGVHARSYGTIFSTLCTSEQIEEAHEWVVDNEALQARPKALIPFYTAD
DPLKSKIAAALMPGFLLYGGFYLPFYLSARGKLPNTSDIIRLILRDKVIHNFYSGYKYQLKVAKLSPEKQAEMKQFVFDL
LDKMIGLEKTYLHQLYDGFGLADEAIRFSLYNAGKFLQNLGYESPFTKEETRIAPEVFAQLSARALDEDWDF

The query sequence (length=312) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 7mms:D 320 312 0.9904 0.9656 0.9904 0.0 6ebo:A, 6ebo:B, 6ebo:C, 6ebo:D, 6ebp:A, 6ebp:B, 6ebp:C, 6ebp:D, 6ebz:A, 6ebz:B, 6ebz:C, 6ebz:D, 7mmp:A, 7mmp:C, 7mmp:B, 7mmq:A, 7mmq:C, 7mmq:B, 7mmr:A, 7mmr:B, 7mmr:C, 7mmr:D, 7mms:A, 7mms:B, 7mms:C, 7mmw:A, 7mmw:B
2 6gp2:A 318 311 0.7724 0.7579 0.7749 0.0 8bt4:A, 8bt4:B, 6gp2:B, 6gp3:A, 6gp3:B
3 1oqu:C 302 297 0.4744 0.4901 0.4983 7.15e-106 3dhz:A, 3dhz:B, 1kgn:A, 1kgn:B, 1kgn:C, 1kgn:D, 1kgo:A, 1kgo:B, 1kgo:C, 1kgo:D, 1kgp:A, 1kgp:B, 1kgp:C, 1kgp:D, 3mjo:A, 3mjo:B, 1oqu:A, 1oqu:B, 1oqu:D
4 2bq1:I 294 294 0.4487 0.4762 0.4762 3.99e-100 2bq1:J, 1r2f:A, 1r2f:B, 2r2f:A, 2r2f:B
5 1uzr:B 288 285 0.4327 0.4688 0.4737 5.93e-99 1uzr:A, 1uzr:C
6 3n37:A 284 282 0.4455 0.4894 0.4929 1.28e-97 3n38:A, 3n39:B, 3n39:A, 3n3a:B, 3n3a:A, 3n3b:B, 3n3b:A
7 4n83:A 285 282 0.3558 0.3895 0.3936 3.07e-67 4n83:B, 4n83:C, 4n83:D, 4n83:E, 4n83:F, 4n83:G, 4n83:H
8 4dr0:B 291 290 0.3462 0.3711 0.3724 3.60e-55 4dr0:A
9 4bmq:A 300 298 0.3301 0.3433 0.3456 1.85e-52 4bmo:A, 4bmp:A, 4bmr:A, 4bmr:B, 4bmt:A, 4bmt:B, 4bmu:A, 4bmu:B, 6qo7:A, 6qo7:B, 6qo8:A, 6qo8:B, 6qo9:A, 6qo9:B, 6qob:A, 6qob:B, 6tqv:A, 6tqv:B, 6tqw:A, 6tqw:B, 6tqy:A, 6tqy:B, 6tqz:A, 6tqz:B, 7z3d:A, 7z3e:A
10 6zjk:A 317 201 0.1731 0.1703 0.2687 1.20e-13 6zjk:C, 6zjk:D, 6zjk:B
11 2rcc:C 311 296 0.2212 0.2219 0.2331 9.91e-12 2rcc:B
12 6w4x:C 375 292 0.2212 0.1840 0.2363 2.54e-10 7ai8:A, 7ai9:A, 2alx:A, 1av8:A, 1av8:B, 2av8:A, 2av8:B, 7bet:A, 1biq:A, 1biq:B, 5ci0:A, 5ci1:A, 5ci2:A, 5ci3:A, 5ci4:A, 5cns:E, 5cns:F, 5cns:G, 5cns:H, 5cnt:E, 5cnt:F, 5cnt:G, 5cnt:H, 5cnu:E, 5cnu:F, 5cnu:G, 5cnu:H, 5cnv:E, 5cnv:F, 5cnv:G, 5cnv:H, 4erm:E, 4erm:F, 4erm:G, 4erm:H, 4erp:E, 4erp:F, 4erp:G, 4erp:H, 1jpr:A, 1jpr:B, 1jqc:A, 1jqc:B, 1mrr:A, 1mrr:B, 1mxr:A, 1mxr:B, 1pfr:A, 1pfr:B, 1pim:A, 1pim:B, 1piu:A, 1piu:B, 1piy:A, 1piy:B, 1piz:A, 1piz:B, 1pj0:A, 1pj0:B, 1pj1:A, 1pj1:B, 1pm2:A, 1pm2:B, 1r65:A, 1r65:B, 1rib:A, 1rib:B, 1rnr:A, 1rnr:B, 1rsr:A, 1rsr:B, 1rsv:A, 1rsv:B, 3uus:E, 3uus:F, 3uus:G, 3uus:H, 6w4x:D, 1xik:A, 1xik:B, 2xof:A, 2xof:B, 1yfd:A, 1yfd:B
13 7mdi:E 353 322 0.2340 0.2068 0.2267 4.02e-09 7mdi:G, 7mdi:F, 7mdi:H
14 7aik:A 321 175 0.1410 0.1371 0.2514 5.55e-09 7ail:A, 7q39:AAA, 7q3c:AAA
15 3hf1:B 286 215 0.1571 0.1713 0.2279 1.81e-07 3hf1:A, 2vux:A
16 4d8f:B 334 228 0.1859 0.1737 0.2544 1.82e-06 2ani:A, 4d8f:A, 4d8f:C, 4d8f:D, 4d8g:A, 4d8g:B, 4d8g:C, 4d8g:D, 4m1i:A, 4m1i:B, 4m1i:C, 4m1i:D, 1syy:A
17 2vux:B 255 202 0.1314 0.1608 0.2030 2.98e-06
18 1h0n:A 288 247 0.1538 0.1667 0.1943 3.11e-06 1h0o:A, 2uw2:A, 3vpm:A, 3vpm:B, 3vpn:A, 3vpn:B, 3vpo:A, 3vpo:B, 1w68:A, 1w69:A, 1xsm:A
19 1jk0:A 334 195 0.1442 0.1347 0.2308 3.81e-05
20 6y2n:A 306 261 0.1891 0.1928 0.2261 9.45e-05
21 2o1z:A 288 228 0.1571 0.1701 0.2149 0.002 2o1z:B, 2p1i:A, 2p1i:B, 2p1i:C, 2p1i:D, 2p1i:E, 2p1i:F, 2p1i:G, 2p1i:H
22 4ac8:A 311 215 0.1378 0.1383 0.2000 0.008 4ac8:B, 4ac8:C, 4ac8:D, 3ee4:A
23 6yxx:AW 278 104 0.0897 0.1007 0.2692 0.12 7aoi:AW, 6hiv:AW, 6hix:AW, 6yxy:AW
24 7qbp:A 291 217 0.1186 0.1271 0.1705 0.65
25 8tcl:B 316 26 0.0417 0.0411 0.5000 1.8 8tcm:B
26 7xin:A 470 101 0.0929 0.0617 0.2871 2.4 7xin:C, 7xin:E
27 8vda:A 311 61 0.0673 0.0675 0.3443 2.9
28 8ayh:B 951 57 0.0641 0.0210 0.3509 5.3 3frp:A, 3hrz:A, 3hs0:A, 3hs0:F
29 4d56:A 482 90 0.0865 0.0560 0.3000 6.3 4d4g:A, 4d4i:A, 4d57:A
30 5msr:B 520 86 0.0609 0.0365 0.2209 8.5 5msp:A, 5msr:A, 5msr:C, 5msr:D, 5msv:A, 5msv:B, 5msv:C, 5msv:D
31 4zgl:F 102 27 0.0321 0.0980 0.3704 9.0 4zgl:B, 4zgl:C, 4zgl:H, 4zgl:I
32 8a22:An 170 43 0.0353 0.0647 0.2558 9.2 8apn:An, 8apo:An

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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