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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
NYNPPQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYPQAESVHRLDMATSGVIVVALTKAAERELK
RQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWPNRPKQKVCYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQL
RVHMLALGHPILGDRFYASPEARAMAPRLLLHAEMLTITHPAYGNSMTFKAPADF

The query sequence (length=215) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 2i82:A 217 215 1.0000 0.9908 1.0000 7.05e-163 2i82:B, 2i82:C, 2i82:D
2 7bl5:7 317 225 0.3721 0.2524 0.3556 4.21e-29
3 5uba:A 261 183 0.2977 0.2452 0.3497 2.11e-18
4 6yxx:EC 373 181 0.2605 0.1501 0.3094 7.09e-12 7aoi:XP, 6yxy:EC
5 7am2:BZ 351 181 0.2279 0.1396 0.2707 9.09e-08
6 2qpx:A 376 113 0.1349 0.0771 0.2566 0.17
7 7ooc:B 215 46 0.0698 0.0698 0.3261 2.4 7p6z:B, 7pah:B, 7pai:B, 7paj:B, 7pak:B, 7pal:B, 7pam:B, 7pan:B, 7pao:B, 7paq:B, 7par:B, 7pas:B, 7ph9:B, 7pha:B, 7phb:B, 7phc:B, 7pi8:B, 7pi9:B, 7pia:B, 7pib:B, 7pic:B, 7pio:B, 7pip:B, 7piq:B, 7pir:B, 7pis:B, 7pit:B
8 7ylg:A 142 80 0.0930 0.1408 0.2500 2.8
9 7yoj:A 867 98 0.0977 0.0242 0.2143 3.5
10 6sga:FS 277 69 0.0837 0.0650 0.2609 4.1 6sga:FQ, 6sga:FR, 6sga:FU, 6sgb:FQ, 6sgb:FR, 6sgb:FU
11 8eui:E 183 116 0.1488 0.1749 0.2759 4.3 8esq:E, 8esr:E, 8etc:E, 8eth:E, 8eti:E, 8etj:E, 8eug:E, 8eup:E, 8euy:E, 8ev3:E
12 3pps:A 564 38 0.0605 0.0230 0.3421 7.9 3pps:B, 3pps:C, 3pps:D
13 8wuw:H 529 71 0.0744 0.0302 0.2254 8.0 8wuw:A, 8wuw:B, 8wuw:I, 8wuw:C, 8wuw:J, 8wuw:D, 8wuw:K, 8wuw:E, 8wuw:L, 8wuw:F, 8wuw:M, 8wuw:G, 8wuw:N, 8wux:A, 8wux:H, 8wux:B, 8wux:I, 8wux:C, 8wux:J, 8wux:D, 8wux:K, 8wux:E, 8wux:L, 8wux:F, 8wux:M, 8wux:G, 8wux:N

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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