Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
NYLFEYAPDVLESFPNKHVNRDYFVKFNCPEFTSLAPKTGQPDFATIYISYIPDEKMVESKSLKLYLFSFRNHGDFHEDC
MNIIMNDLIELMDPRYIEVWGKFTPRGGISIDPYTNYGKPGTKYEKMAEYRMMNHDLYPETIDNR

The query sequence (length=145) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 4f8b:B 145 145 0.9931 0.9931 0.9931 3.64e-107 4f8b:A, 4f8b:C, 4f8b:D, 4f8b:E, 4fgc:A, 4fgc:B, 4fgc:C, 4fgc:D, 4fgc:E, 5udg:A, 5udg:D, 5udg:E
2 3s19:A 261 111 0.2345 0.1303 0.3063 1.12e-11 3bp1:A, 3bp1:B, 3bp1:C, 3bp1:D, 4ghm:A, 4ghm:B, 4iqi:A, 4iqi:B, 3rzp:A, 3rzp:B, 3rzp:C, 3rzp:D, 3s19:B, 3s19:C, 3s19:D, 3uxj:A, 3uxj:B, 3uxj:C, 3uxj:D, 3uxv:A, 3uxv:B, 3uxv:C, 3uxv:D
3 3s19:A 261 81 0.1724 0.0958 0.3086 9.6 3bp1:A, 3bp1:B, 3bp1:C, 3bp1:D, 4ghm:A, 4ghm:B, 4iqi:A, 4iqi:B, 3rzp:A, 3rzp:B, 3rzp:C, 3rzp:D, 3s19:B, 3s19:C, 3s19:D, 3uxj:A, 3uxj:B, 3uxj:C, 3uxj:D, 3uxv:A, 3uxv:B, 3uxv:C, 3uxv:D
4 8csq:a 263 54 0.1310 0.0722 0.3519 0.58
5 4xqk:A 1517 85 0.1724 0.0165 0.2941 1.4 4xqk:B
6 3ihg:A 535 26 0.0759 0.0206 0.4231 1.8 3ihg:B, 3ihg:C
7 5jyx:B 109 69 0.1034 0.1376 0.2174 3.7 5jyx:A, 5jyx:E, 5jyx:C, 5jyx:J, 5jyx:D, 5jyx:H, 5jyx:F, 5jyx:O, 5jyx:G, 5jyx:L, 5jyx:I, 5jyx:K, 5jyx:M, 5jyx:N
8 7x54:A 285 81 0.1448 0.0737 0.2593 3.9 7x54:B, 7x54:C, 7x54:D, 7x54:E, 7x55:A, 7x55:B, 7x55:C, 7x55:D, 7x55:E, 7x56:A, 7x56:B, 7x56:C, 7x56:D, 7x56:E, 7x59:A, 7x59:B, 7x59:C, 7x59:D, 7x59:E
9 1wm9:A 185 65 0.1103 0.0865 0.2462 6.9 1wm9:B, 1wm9:C, 1wm9:D, 1wm9:E, 1wuq:A, 1wuq:B, 1wuq:E, 1wuq:C, 1wuq:D, 1wur:A, 1wur:B, 1wur:E, 1wur:C, 1wur:D
10 3qhb:A 179 37 0.0759 0.0615 0.2973 7.3 3qhb:B, 3qhc:A, 3qhc:B, 3sid:A, 3sid:B
11 5f55:A 705 41 0.1103 0.0227 0.3902 9.0 5f54:A, 5f56:A, 6lrd:A

[Back]

Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218