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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
NYENLSKLLTRYSTLNTLIKLSADPSAINAARENLGASAKNLIGDTKNSPAYQAVLLAINAAVGFWNVLGYATQCGGNAN
GQESTSSTTIFNNEPGYRSTSITCSLNRYKPGYYGPMSIENFKKLNEAYQILQTALNKGLPALKENNGTIKDVTYSYICY
GEGNNNCEIKLADGQKLQQNGGSETTTQTIDGKTVSTTISSKVVDSTAADNTYKQSYTEITNALKDVPDSAQALLAQAST
LINTINTACPYFSVTNKSGGPQMEPTRGKLCGFTEEISAIQKMITDAQELVNQTSVINEHEQSTPVGGNNGKPFNPFTDA
SFAQGMLANASAQAKMLNLAHQVGQTINPDNLTGTFKNFVTGFLATCNNKGSPPGTVTTQTFASGCAYVEQTITNLNNSI
AHFGTQEQQIQQAENIADTLVNFGSH

The query sequence (length=426) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 5f93:B 426 426 1.0000 1.0000 1.0000 0.0 5f7m:A, 5f7m:B, 5f7n:A, 5f7n:B, 5f7w:A, 5f7w:B, 5f7y:A, 5f7y:B, 5f8r:A, 5f8r:B, 5f93:A, 5f93:E, 5f93:G, 5f97:A, 5f97:B, 5f97:C, 5f97:D, 5f9a:A, 5f9d:A
2 4zh7:A 485 428 0.7981 0.7010 0.7944 0.0
3 6avz:B 347 417 0.3075 0.3775 0.3141 1.11e-36
4 6leb:A 315 106 0.0704 0.0952 0.2830 0.82 6leb:B, 6lxs:A
5 8a0c:A 1116 60 0.0469 0.0179 0.3333 2.1 8a0c:B, 8a0m:A, 8a0m:C
6 6rm3:LD0 282 73 0.0376 0.0567 0.2192 2.3
7 7bkb:H 438 66 0.0399 0.0388 0.2576 2.6 7bkb:h, 7bkc:H, 7bkc:h
8 3rbh:D 410 92 0.0540 0.0561 0.2500 3.0 3rbh:C
9 4g7e:B 833 24 0.0258 0.0132 0.4583 3.2
10 3plx:B 101 51 0.0376 0.1584 0.3137 4.5
11 2iw3:B 980 34 0.0376 0.0163 0.4706 5.3 7b7d:EF, 2iw3:A, 2iwh:A, 2iwh:B
12 7ohu:P 108 56 0.0399 0.1574 0.3036 7.0 7ohp:P
13 7olc:La 148 24 0.0211 0.0608 0.3750 9.3 7old:La, 8oo0:La, 7z3n:La, 7z3o:La

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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