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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
NWSELPALVLPSLRLDALLDLGEGHAVGVVRSADAARWTVPLVRSRPGDGTAEHLVAALARRAAFVLEAFTGERGIINES
VIVGECAVVKWAVRLPAEEPGSPAAQRIAALARGGFTEMPRPWGLLTLAEGAQPVLLASVVAYLPGALDGWDWAVDDVRR
LARGELTMDQALLPAAQLGTLTARMHAALAARGRTPATAADVAAWGVRMREELDEAVASVPGAEGERLKAWAPRIADVYA
ELDALAGTPLIDVHGDFHVGQILRADGRYAVVDFDGNPVLPADQRAARQPAALDVVGMTASLDHVGRVVVFRTPDVDPAP
VRAWIAAAQRSFLDAYRTTLARLDADDLFDDRLLTPLRYAQEVREYLYAVRHLPHWVYVPDLSLTDLLPERLKDKLA

The query sequence (length=397) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 6hwj:A 428 425 0.9824 0.9112 0.9176 0.0 6hwj:B, 6hwk:A, 6hwk:C, 6hwk:D, 6hwl:B
2 4o7p:B 451 258 0.2040 0.1796 0.3140 2.23e-15
3 4u94:A 451 322 0.2242 0.1973 0.2764 4.66e-12 4u98:A, 4wzy:A
4 8om2:Q 235 113 0.0655 0.1106 0.2301 3.3 8d8j:Q, 8d8k:Q, 8d8l:Q, 5mrc:QQ, 5mre:QQ, 5mrf:QQ, 8om3:Q, 8om4:Q
5 8uhw:B 859 148 0.0957 0.0442 0.2568 4.5 8uhw:C, 8uhw:D, 8uhw:E
6 7bj4:A 406 40 0.0428 0.0419 0.4250 7.9 7bj4:B, 7bj4:C, 7bj4:D, 7bj4:E, 7bj4:F, 7bj4:G, 7bj4:H, 7bj4:I, 7bj4:J, 7bjc:A, 7bjc:B, 7bjc:C, 7bjc:D, 7bjc:E, 7bjc:F, 7bjc:G, 7bjc:H, 7bjc:I, 7bjc:J
7 5w8q:A 379 39 0.0428 0.0449 0.4359 9.2 5w8q:B, 5wc4:A, 5wc4:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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