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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
NWFKITIPYGRKYDKAWLLSMIQSKCSVPFTPIEFHYENTRAQFFVEDASTASALKAVNYKILDRENRRISIIINSSAPP
HTILNELKPEQVEQLKLIMSKRYDGSQQALDLKGLRSDPDLVAQNIDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRL
YRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLCDTFRDQSTYISAIRERFPKLLRLDGHELP
PPIAF

The query sequence (length=245) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 3rw6:A 245 245 1.0000 1.0000 1.0000 0.0 3rw6:B
2 8hfr:CW 427 170 0.1918 0.1101 0.2765 4.12e-08 8hfr:EX, 4wwu:B, 4wwu:E, 4wwu:G
3 6zxd:k 430 43 0.0857 0.0488 0.4884 0.015 6zxe:k, 6zxf:k, 6zxg:k
4 6f4g:D 176 91 0.1143 0.1591 0.3077 0.022
5 3oja:B 534 110 0.1347 0.0618 0.3000 0.030
6 3oja:B 534 59 0.0980 0.0449 0.4068 0.69
7 5hl3:A 356 69 0.1020 0.0702 0.3623 0.055
8 7k5j:I 979 67 0.0980 0.0245 0.3582 0.12 7k5j:D, 7k5j:A, 7k5j:C, 7k5j:G, 7k5j:K, 7k5j:S, 5tr4:A, 5tr4:C
9 4r6g:A 464 72 0.1020 0.0539 0.3472 0.13
10 4r6g:A 464 44 0.0776 0.0409 0.4318 0.96
11 4r6g:A 464 42 0.0735 0.0388 0.4286 1.9
12 4r6g:A 464 36 0.0735 0.0388 0.5000 4.1
13 4r6g:A 464 57 0.0857 0.0453 0.3684 4.7
14 8pfi:B 734 107 0.1265 0.0422 0.2897 0.19 8pfi:A, 7r52:A
15 4qbz:A 754 152 0.1592 0.0517 0.2566 0.37 5awa:A, 5awb:A, 5awc:A, 5awc:B, 5awc:C, 5awc:D, 5awd:A, 5az5:A, 5az5:B, 5az5:C, 5az5:D, 7crf:A, 7crf:B, 6kya:A, 6kya:B, 4qbz:B, 4qc0:A, 4qc0:B, 4r07:A, 4r07:B, 4r07:C, 4r07:D, 4r08:A, 4r08:B, 4r08:C, 4r08:D, 4r09:A, 4r09:B, 4r09:C, 4r09:D, 4r0a:A, 7r52:B, 7r53:A, 7r53:B, 7r54:A, 7r54:B, 4r6a:A, 4r6a:B, 7rc9:A, 7rc9:B, 6ty5:A, 6ty5:B, 6v9u:A, 6v9u:B, 3w3g:A, 3w3j:A, 3w3j:B, 3w3k:A, 3w3k:B, 3w3l:A, 3w3l:B, 3w3l:D, 3w3l:C, 3w3m:A, 3w3n:A, 3w3n:B, 6wml:A, 6wml:B, 6wml:C, 6wml:D, 3wn4:A, 5wyx:A, 5wyx:B, 5wyz:A, 5wyz:B, 7ytx:A, 7ytx:B, 5z14:A, 5z14:B, 5z15:A, 5z15:B, 6zjz:A, 6zjz:B
16 5guh:A 759 48 0.0653 0.0211 0.3333 0.99
17 4arn:B 273 64 0.0816 0.0733 0.3125 1.3 4arr:A, 4arr:B
18 4nhf:F 143 69 0.0694 0.1189 0.2464 1.3 4nhf:B, 4nhf:C
19 3pm6:A 287 117 0.0980 0.0836 0.2051 1.4
20 1n2z:A 245 46 0.0571 0.0571 0.3043 1.9 5m29:A, 5m29:B, 5m2q:A, 5m2q:B, 5m34:A, 5m34:B, 5m3b:A, 5m3b:B, 1n2z:B, 1n4a:A, 1n4a:B
21 5ixo:A 596 77 0.1102 0.0453 0.3506 2.8 5ixq:A, 5ixt:A, 5iyv:A, 5iyx:A
22 2p1n:B 571 111 0.1306 0.0560 0.2883 3.1 3c6n:B, 3c6o:B, 3c6p:B, 2p1m:B, 2p1n:E, 2p1o:B, 2p1p:B, 2p1q:B
23 1gp6:A 349 101 0.0980 0.0688 0.2376 5.7 2brt:A, 1gp4:A, 1gp5:A
24 1kv9:A 664 21 0.0490 0.0181 0.5714 5.7
25 4u06:A 344 88 0.1020 0.0727 0.2841 6.8
26 7wv3:A 668 62 0.0898 0.0329 0.3548 8.4 7wv3:B, 7wv3:C, 7wv3:D, 7wv4:A, 7wv4:B, 7wv4:C, 7wv4:D, 7wv5:A, 7wv5:B, 7wve:A, 7wve:B, 7wvf:A, 7wvf:B, 7wvj:A, 7wvj:B
27 7ok9:B 525 60 0.0776 0.0362 0.3167 8.6 7o4a:AAA, 7ok9:A, 7ok9:E, 7ok9:C, 7ok9:G, 7ok9:H, 7ok9:I, 7ok9:D, 7ok9:F, 7ok9:J
28 5e34:A 323 65 0.0776 0.0588 0.2923 9.4 5e35:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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