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BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
NVTQAFGRRGPEQTQGNFGDQELIRQGTDYKHWPQIAQFAPSASAFFGMSRIGMEVTPSGTWLTYTGAIKLDDKDPNFKD
QVILLNKHIDAYKTFP

The query sequence (length=96) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 7o36:C 113 96 1.0000 0.8496 1.0000 3.90e-70 7n0i:D, 7o35:C, 7o35:D, 7o36:A, 7o36:B, 7o36:D, 7uxz:AAA, 7xxk:A, 7xxk:B, 7xxk:C, 7xxk:E
2 6g13:B 113 101 0.5521 0.4690 0.5248 3.00e-29 6g13:A
3 7b93:R 96 23 0.1146 0.1146 0.4783 2.2 7ak5:R, 7ak6:R, 8c2s:R, 8ca3:R, 6g2j:R, 6g72:R, 8iao:R, 8iap:R, 8ib4:R, 8ib5:R, 8ib9:R, 8iba:R, 8ibd:R, 8ibe:R, 8ic2:R, 8ic3:R, 8olt:R, 8om1:R, 7psa:R, 8pw5:7, 8pw6:7, 8pw7:7, 8rgp:7, 8rgq:7, 8rgr:7, 8rgt:7, 6zr2:R, 6ztq:R
4 5xf9:D 455 75 0.2188 0.0462 0.2800 3.9 5xf9:H, 5xfa:D, 5xfa:H
5 6s73:A 269 53 0.1458 0.0520 0.2642 5.2 5de2:A, 5de2:B, 6s73:B, 6s73:C, 6s75:A, 6s75:B, 6s75:C, 2wqn:A
6 2fna:A 352 17 0.1042 0.0284 0.5882 6.0 2fna:B
7 8wex:B 388 58 0.1354 0.0335 0.2241 8.1 8wex:A
8 6f0k:B 961 41 0.1354 0.0135 0.3171 8.2
9 9f17:A 413 28 0.0938 0.0218 0.3214 8.7 9f17:B, 7pvo:A, 8qwa:A, 6zxq:A
10 6skz:A 2638 22 0.1042 0.0038 0.4545 9.2 6sl0:A, 6sl0:B
11 6sl1:A 2652 22 0.1042 0.0038 0.4545 9.2 6sky:A, 6sky:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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