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BioLiP
>protein
NVSGISAYLLGLIIGDGGLYKLKYKGNRSEYRVVITQKSENLIKQHIAPLMQFLIDELNVKSKIQIVKGDTRYELRVSSK
KLYYYFANMLERIRLFNMREQIAFIKGLYVAEGDKTLKRLRIWNKNKALLEIVSRWLNNLGVRNTIHLDDHRHGVYVLNI
SLRDRIKFVHTILSSHL

The query sequence (length=177) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 4unc:D 192 177 1.0000 0.9219 1.0000 4.61e-127 5a0w:A, 5a0w:G, 5a0w:D, 5ak9:A, 5ak9:E, 5ak9:J, 5akf:A, 5akf:E, 5akf:I, 5akm:A, 5akm:K, 5akm:F, 5akn:A, 5akn:F, 5akn:K, 4d6n:A, 4d6n:K, 4d6n:F, 4d6o:A, 4d6o:G, 4d6o:D, 5o6g:A, 5o6g:G, 5o6g:D, 5o6i:A, 5o6i:F, 5o6i:K, 4un7:A, 4un7:G, 4un7:D, 4un8:A, 4un8:G, 4un8:D, 4un9:A, 4un9:G, 4un9:D, 4una:A, 4una:G, 4una:D, 4unb:A, 4unb:D, 4unb:G, 4unc:A, 4unc:G, 4ut0:A, 4ut0:K, 4ut0:F, 2vs7:A, 2vs7:G, 2vs7:D, 2vs8:A, 2vs8:K, 2vs8:F
2 1mow:A 248 113 0.5480 0.3911 0.8584 2.49e-62 1mow:D, 1mow:G, 1mow:J
3 1dq3:A 454 62 0.1243 0.0485 0.3548 0.20
4 7zvw:G 422 105 0.1864 0.0782 0.3143 3.3
5 5nbs:A 842 28 0.0678 0.0143 0.4286 6.1 5nbs:B
6 2fld:A 161 75 0.1073 0.1180 0.2533 6.6 3ko2:A, 3ko2:B, 3ko2:F, 3ko2:G, 1m5x:A, 1m5x:B, 3mis:A, 3mis:B
7 7bv3:B 439 20 0.0621 0.0251 0.5500 9.9

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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