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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
NVQFSNQDGALGEPANYTQFQHVLTESELQISDAEGKKGNKEYFALDGNFTGIVNQYFYVDKKSEALVFKMKNDHLRNEV
RVHKNFRTDLPNKLYTLSAEVEIIDPVASMKNSNSKQNEITFLQVANKGLDNQGTHNVPHPLLRVVWKEDANSVKGHFWA
MVKNNAVICKGSFGKKNKDKEMCKADVAYKKYDLGKAPLNKATAFDITVGNKQLIIDVDGKRLVEHDIDYWRHLLSYFKA
GVANQFTNGMSEAHFNKLEYKALETK

The query sequence (length=266) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 7c8f:A 266 266 1.0000 1.0000 1.0000 0.0 7c8f:B
2 7w16:A 264 255 0.4549 0.4583 0.4745 9.62e-67
3 7w18:A 212 235 0.2293 0.2877 0.2596 1.60e-11 7w13:A
4 7ncz:A 227 241 0.2105 0.2467 0.2324 0.10 7nm6:A, 7npp:A, 7ny3:A, 7o6h:A, 7oof:A, 7ory:A, 7p25:A, 7p90:A, 7pbf:A
5 3rf7:A 362 187 0.1504 0.1105 0.2139 0.98
6 3wnk:A 712 118 0.1053 0.0393 0.2373 1.2 3wnl:A, 3wnm:A, 3wnn:A, 3wnn:B, 3wno:A, 3wno:B, 3wnp:A, 3wnp:B
7 4hrg:A 114 36 0.0526 0.1228 0.3889 2.3 1bt6:A, 1bt6:B, 4drw:A, 4drw:B, 4drw:C, 4drw:D, 4ftg:A, 4ftg:B, 4hre:E, 4hre:F, 4hre:I, 4hre:J, 4hrg:B, 4hrh:A, 4hrh:B
8 8cuy:A 1016 27 0.0451 0.0118 0.4444 3.1
9 6c5c:A 385 76 0.0865 0.0597 0.3026 4.9 6c5c:B
10 8twe:B 423 42 0.0489 0.0307 0.3095 9.5

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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