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BioLiP
>protein
NVLTAILLLLRELDAEGLEAVQQTVGSRLQA

The query sequence (length=31) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 8axr:A 31 31 1.0000 1.0000 1.0000 1.20e-14
2 1wuf:A 371 22 0.3226 0.0270 0.4545 0.76 1wuf:B
3 6d8v:A 269 20 0.2581 0.0297 0.4000 3.2
4 8adl:A 633 17 0.2903 0.0142 0.5294 4.0 8adl:I
5 8r9t:A 33 29 0.3548 0.3333 0.3793 4.0
6 5t5q:C 245 20 0.3226 0.0408 0.5000 6.4 5t5q:A, 5t5q:B, 5t5q:D
7 7o7t:A 716 27 0.3871 0.0168 0.4444 9.2

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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