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BioLiP
>protein
NVLQIVRDHWVHILVPVGFVFGCYLDRRSDEKLTAFRNKSLLFKRELRPNEEVTWK

The query sequence (length=56) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 7v31:n 56 56 1.0000 1.0000 1.0000 3.70e-37 7vyg:n, 7w1t:n, 7w1u:n, 7w2l:n
2 2d0b:A 308 57 0.2857 0.0519 0.2807 0.70 2d0c:A
3 3hbz:A 341 41 0.2500 0.0411 0.3415 2.0
4 7t3u:C 1575 46 0.2679 0.0095 0.3261 2.9
5 7t3u:A 2020 46 0.2679 0.0074 0.3261 5.0 7t3u:D
6 7t3p:A 2066 46 0.2679 0.0073 0.3261 5.2 7t3p:B, 7t3p:C, 7t3p:D
7 7t3q:A 2103 46 0.2679 0.0071 0.3261 5.3 7t3q:B, 7t3q:C, 7t3q:D, 7t3u:B
8 2c1q:A 123 38 0.2500 0.1138 0.3684 6.5 2c1s:A, 2c1s:B
9 8tkd:A 2249 47 0.2857 0.0071 0.3404 8.2 8tkd:B, 8tkd:C, 8tkd:D, 8tke:A, 8tke:B, 8tke:C, 8tke:D, 8tkg:A, 8tkg:B, 8tkg:C, 8tkg:D, 8tl9:A, 8tl9:B, 8tla:A, 8tla:B
10 8tkf:A 2272 47 0.2857 0.0070 0.3404 8.2 8tkf:D, 8tkf:B, 8tkf:C
11 6dr0:C 2193 47 0.2857 0.0073 0.3404 8.9 6dqj:A, 6dqj:B, 6dqj:C, 6dqj:D, 6dqn:A, 6dqn:B, 6dqn:C, 6dqn:D, 6dqs:A, 6dqs:B, 6dqs:C, 6dqs:D, 6dqv:A, 6dqv:B, 6dqv:C, 6dqv:D, 6dqz:A, 6dqz:B, 6dqz:D, 6dqz:C, 6dr0:A, 6dr0:B, 6dr0:D, 6dr2:A, 6dr2:B, 6dr2:C, 6dr2:D, 6dra:A, 6dra:B, 6dra:C, 6dra:D, 6drc:A, 6drc:B, 6drc:C, 6drc:D

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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