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BioLiP
>protein
NVEKFEGAELHVHVTGSISAALVPWWIHWLREFQPELVVNVSVTPAASRFLAVRALRHLANGKVWVDSWDDPDVPPEVNS
GKSGASECFLVFPATLDTVMRLAQGRADSPALMMLQLTDAPLVIADTFPGSNEIVENNVQTLKLRPNVEFAPRVEVGFNL
PGALAAANRMRKEGRS

The query sequence (length=176) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 6jdd:A 176 176 1.0000 1.0000 1.0000 3.37e-128
2 7cfu:F 175 133 0.1875 0.1886 0.2481 0.034 7cfu:H, 7cfu:S, 7cfu:T, 7cfu:P, 7cfu:A, 7cfu:B, 7cfu:C, 7cfu:D, 7cfu:E, 7cfu:G, 7cfu:I, 7cfu:J, 7cfu:K, 7cfu:L, 7cfu:M, 7cfu:N, 7cfu:O, 7cfu:Q, 7cfu:R, 7cfu:U, 7cfu:V, 7cfu:W, 7cfu:X
3 6jls:A 162 118 0.1761 0.1914 0.2627 0.094
4 5zue:A 309 69 0.1307 0.0744 0.3333 0.33 4kwe:A, 4kwe:B, 4kwe:C, 2q1y:A, 1rlu:A, 1rq7:A, 5v68:B, 5v68:E, 6y1u:A, 6y1u:B, 6y1v:A, 6y1v:B, 6ym1:A, 6ym9:A
5 6tgv:C 389 157 0.2330 0.1054 0.2611 0.41 8ow5:A, 8ow5:B, 8ow5:C, 8ow5:D, 8owb:A, 8owb:B, 8owb:C, 8owb:D, 8owp:A, 8owp:B, 8owp:C, 8owp:D, 8owq:A, 8owq:B, 8owq:C, 8owq:D, 8owr:A, 8owr:C, 8owr:D, 4qji:A, 4qji:B, 6tgv:A, 6tgv:B, 6tgv:D, 6th2:A, 6th2:C, 6thc:A, 6thc:B, 6thc:C, 6thc:D
6 6ax9:A 340 23 0.0682 0.0353 0.5217 0.55 6axm:A, 6axn:A, 6axu:A, 3kb9:A, 7kj8:A, 7kj9:A, 7kjd:A, 7kje:A, 7kjf:A, 7kjg:A, 3lg5:A, 4ltz:A, 4luu:A, 4lxw:A, 4lz0:A, 4lz3:A, 4lzc:A, 6ofv:A, 8su1:A, 8su2:A, 8su3:A, 8su4:A, 8su5:A, 8v3k:A
7 4csf:K 251 88 0.1307 0.0916 0.2614 0.99 4csf:A, 4csf:B, 4csf:F, 4csf:C, 4csf:D, 4csf:E, 4csf:G, 4csf:H, 4csf:L, 4csf:I, 4csf:J, 4csf:M, 4csf:N, 4csf:R, 4csf:O, 4csf:P, 4csf:Q, 4csf:S, 4csf:T, 4csf:X, 4csf:U, 4csf:V, 4csf:W
8 4eh1:A 237 49 0.0852 0.0633 0.3061 1.4 4eh1:B
9 3ikh:A 286 81 0.1136 0.0699 0.2469 2.4 3i3y:D, 3ikh:B, 3ikh:C, 3ikh:D
10 6rtd:B 466 74 0.1250 0.0472 0.2973 2.6 6rtd:A, 6rte:A, 6rte:B
11 5o6m:D 264 50 0.0852 0.0568 0.3000 4.1 5lc9:B, 5lc9:C, 5lc9:D, 5lcd:A, 5lcd:B, 5lcd:C, 5lcd:D, 5ld1:A, 5ld1:D, 5ld1:B, 5ld1:C, 5ldb:A, 5ldb:B, 5ldb:C, 5ldb:D, 5maq:A, 5maq:B, 5maq:C, 5maq:D, 5o6k:A, 5o6k:B, 5o6k:C, 5o6k:D, 5o6m:A, 5o6m:B, 5o6m:C

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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