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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
NVEGVKKTILHGGTGELPNFITGSRVIFHFRTMKCDEERTVIDDSRQVGQPMHIIIGNMFKLEVWEILLTSMRVHEVAEF
WCDTIHTGVYPILSRSLRQMAQGKDPTEWHVHTCGLANMFAYHTLGYEDLDELQKEPQPLVFVIELLQVDAP

The query sequence (length=152) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 5u9j:A 152 152 1.0000 1.0000 1.0000 6.20e-114 5u9i:A, 5u9j:B, 5v35:A
2 4lax:A 237 81 0.1711 0.1097 0.3210 0.017 4drj:A, 4lay:A, 6rcy:A, 4tw8:A, 4tw8:B
3 3pa7:A 124 82 0.1645 0.2016 0.3049 0.024 3ihz:A, 3ihz:B, 4itz:A, 4itz:B, 4j4o:A, 4mgv:A
4 6mke:A 117 75 0.1382 0.1795 0.2800 0.24 6mke:B, 6mke:C, 6mke:D
5 6tlx:A 112 71 0.1382 0.1875 0.2958 3.7
6 6auf:B 273 35 0.0724 0.0403 0.3143 6.1

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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