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BioLiP
>protein
NVDEFLFISNNFKQYKEFIDMDTAKHYFECRNIEGLNHILDSYKDSKSTKEKNLFALVKVLLATLTEEDCLTERTYLSNY
LINIETWSHYETVLFNNCMFIFESCFIEMVFSKVILNLDKYNTLRYYGNESIRMFVNMLILFIQRQEYDKASEILAKIED
YQLNDDCLYERCCVSFFDGIIGLINGKEGAEQKCVQILEIFQLLNCKTIHHMFQTYLEAIKHKLSLE

The query sequence (length=227) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 6dql:A 227 227 1.0000 1.0000 1.0000 3.24e-167
2 6w1a:A 274 226 0.2731 0.2263 0.2743 2.30e-10 6w1a:B, 4yv9:A, 4yv9:B, 4yv9:C, 4yv9:D
3 6w1f:A 280 225 0.2467 0.2000 0.2489 0.004 7ji0:A, 7ji0:B, 6w1f:B
4 4ryk:A 295 237 0.1850 0.1424 0.1772 0.10
5 6hqv:A 1555 47 0.0705 0.0103 0.3404 0.27 6hqv:B
6 6rm3:LJ0 168 57 0.0925 0.1250 0.3684 1.1
7 7r49:H 77 19 0.0396 0.1169 0.4737 3.7
8 2nzy:C 351 46 0.0749 0.0484 0.3696 4.6 2nzx:A, 2nzx:B, 2nzx:C, 2nzy:A, 2nzy:B, 5zoi:A, 5zoi:B
9 7l7b:C 1166 78 0.0969 0.0189 0.2821 4.6
10 8y6i:A 646 108 0.1366 0.0480 0.2870 5.1
11 7b1s:D 593 34 0.0573 0.0219 0.3824 7.6 7b1s:A, 7b2c:A, 7b2c:D

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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