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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
NVAHGLAWSYYIGYLRLILPELQARIRTYNQHAVSQRLYILLPLDCGVPDNLSMADPNIRFLDKLPQQTGDRAGIKDRVY
SNSIYELLENGQRAGTCVLEYATPLQTLFAMSQYSQAGFSREDRLEQAKLFCRTLEDILADAPESQNNCRLIAYQESFSL
SQEVLRHLRQ

The query sequence (length=170) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 8ik3:A 328 182 1.0000 0.5183 0.9341 5.19e-118 8a2h:A, 8a2h:B, 8a2i:A, 8a2i:B, 8a2j:A, 8a2j:B, 8a2k:A, 8a2k:B, 8a2x:A, 7a90:A, 8b2j:A, 8b2j:B, 5bqx:A, 6cff:A, 6cy7:A, 6dnk:A, 6dxg:A, 6dxl:A, 6dxl:B, 4ef4:A, 4ef4:B, 4emt:A, 4emt:B, 4emu:B, 4f5d:A, 4f5d:B, 4f5w:A, 4f5y:A, 4f5y:B, 4f9g:C, 8flk:A, 8flk:B, 8flk:C, 8flk:D, 8flm:A, 8flm:B, 8flm:C, 8flm:D, 8gjx:A, 8gjx:B, 8gt6:A, 8gt6:B, 8ik3:C, 8ik3:E, 8ik3:G, 8ik3:F, 8ik3:H, 4ksy:A, 7kvx:A, 7kvz:A, 7kw1:A, 4loh:A, 4loh:B, 4loi:A, 4loi:B, 7mhc:A, 6mx0:B, 6mx3:B, 6mxe:A, 6mxe:B, 7ob3:A, 8orw:A, 8p01:A, 8p45:A, 7q3b:A, 7q85:A, 4qxo:A, 4qxp:A, 4qxp:B, 4qxq:A, 4qxq:B, 4qxr:A, 4qxr:B, 6s26:A, 6s26:B, 6s27:A, 6s86:A, 6s86:B, 7sho:B, 7shp:A, 7shp:B, 7shp:C, 7shp:D, 7sii:A, 7sii:B, 7sii:C, 7sii:D, 7ssm:A, 8sth:A, 8sti:A, 8t5k:B, 8t5l:B, 7t9u:A, 7t9v:A, 7t9v:B, 6ukm:A, 6uku:A, 6ukv:A, 6ukv:B, 6ukw:A, 6ukw:B, 6ukx:A, 6ukx:B, 6uky:A, 6ukz:A, 6ukz:B, 6ul0:A, 7x9p:A, 7x9q:A, 6xf3:A, 6xf3:B, 6xf4:A, 6xf4:B, 6xnp:A, 6xnp:B, 6y99:A, 6ydb:A, 6ydz:A, 6yea:A, 6ywa:A, 6ywa:B, 6ywb:A, 6z0z:A, 6z15:A, 7zku:A, 7zku:B, 7zv0:A, 7zvk:A, 7zvk:B, 7zwl:A, 7zwl:B, 7zxb:A
2 4f9g:A 170 177 0.9118 0.9118 0.8757 1.08e-103 6mx3:A
3 6a06:A 188 182 0.8412 0.7606 0.7857 1.54e-99 6a03:A, 6a03:B, 6a04:A, 6a04:B, 6a05:A, 6a05:B, 6a06:B, 6iyf:A, 6iyf:B
4 5grm:B 190 181 0.8176 0.7316 0.7680 7.15e-98 5grm:A, 4jc5:A, 4jc5:B, 4kby:A, 4kby:B, 4loj:A, 4loj:B, 4lok:A, 4lok:B, 4lol:A, 4lol:B, 6xnn:A, 6xnn:B, 4yp1:A, 4yp1:B
5 6nt7:A 294 171 0.5176 0.2993 0.5146 1.20e-49 6nt7:B, 6nt8:A, 6nt8:B, 6nt8:D, 6nt8:E
6 8gjz:B 182 161 0.3647 0.3407 0.3851 2.08e-35 8efm:A, 8efm:B, 8gjz:A
7 8efn:A 175 155 0.3412 0.3314 0.3742 1.60e-33 8efn:D
8 5cfl:A 187 177 0.3588 0.3262 0.3446 5.09e-30 5cfl:B, 5cfm:A, 5cfm:B, 5cfn:A, 5cfn:B, 5cfp:A, 5cfp:B, 5cfq:A, 5cfq:B, 5cfr:A, 5cfr:B
9 6wt7:A 331 161 0.3059 0.1571 0.3230 1.98e-26
10 7mwz:D 301 169 0.3118 0.1761 0.3136 3.65e-08
11 7mwz:B 352 169 0.3118 0.1506 0.3136 3.89e-08 7mwz:A, 7mwz:C
12 2voa:A 257 109 0.1647 0.1089 0.2569 0.59 2voa:B
13 1ecx:B 365 22 0.0588 0.0274 0.4545 2.0 1ecx:A, 1eg5:A, 1eg5:B
14 3zq4:A 550 71 0.1176 0.0364 0.2817 2.1 3zq4:C, 3zq4:D, 3zq4:E
15 8phu:BU 313 109 0.1412 0.0767 0.2202 2.9 8phs:AC, 8phs:BK, 8phs:BV, 8phs:CD, 8phs:CN, 8phu:AC, 8phu:BK, 8phu:BV, 8phu:CD, 8phu:CN, 8phu:DC, 8phu:EK, 8phu:EV, 8phu:FD, 8phu:FN, 8phu:GC, 8phu:HK, 8phu:HV, 8phu:ID, 8phu:IN, 8phu:JC, 8phu:KK, 8phu:KV, 8phu:LD, 8phu:LN, 8phu:MC, 8phu:NK, 8phu:NU, 8phu:NV, 8phu:OD, 8phu:ON, 8pkh:BC, 8pkh:BM, 8pkh:BR, 8pkh:BT, 8pkh:BX, 8qo0:AV, 8qo0:AW, 8qo0:Ac, 8qo0:Am, 8qo0:Aq, 8qo0:Ar, 8qo0:At, 8qo0:Av, 8qo0:Ax, 8qo0:BJ, 8qo0:BT, 8qo0:BW, 8qo0:BX, 8qo0:Bc, 8qo0:FR, 8qo0:Fb, 8qo0:Ff, 8qo0:Fg, 8qo0:Fi, 8qo0:Fm, 8qo0:GA, 8qo0:KG, 8qo0:KQ, 8qo0:KV, 8qo0:KX, 8qo0:Kb, 8qo0:Kq, 8qo0:Kz, 8qo0:LD, 8qo0:Ov, 8qo0:PF, 8qo0:PK, 8qo0:PM, 8qo0:PO, 8qo0:PQ, 8qo0:Pb, 8qo0:Ps, 8qo0:TT, 8qo0:Tk, 8qo0:Tu, 8qo0:Tz, 8qo0:UB, 8qo0:UF, 8qo0:UK, 8qo0:UW, 8qo1:AW, 8qo1:Ac, 8qo1:Am, 8qo1:Aq, 8qo1:Ar, 8qo1:As, 8qo1:At, 8qo1:Av, 8qo1:Ax, 8qo1:FK, 8qo1:FR, 8qo1:Fb, 8qo1:Ff, 8qo1:Fg, 8qo1:Fh, 8qo1:Fi, 8qo1:Fm, 8qo1:GF, 8qo1:KG, 8qo1:KQ, 8qo1:KV, 8qo1:KX, 8qo1:Kb, 8qo1:Kf, 8qo1:Kq, 8qo1:Ov, 8qo1:PF, 8qo1:PK, 8qo1:PM, 8qo1:PO, 8qo1:PQ, 8qo1:Pf, 8qo1:Tk, 8qo1:Tu, 8qo1:Tz, 8qo1:UB, 8qo1:UF

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218