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BioLiP
>protein
NTVTSAVKTQYVEIESVDGFYFNTEDKFDTAQIKKAVLHTVYNEGYTGDDGVAVVLREYESEPVDITAELTFGDATPANT
YKAVENKFDYEIPVYYNNATLKDAEGNDATVTVYIGLKGDTDLNNIVDGRDATATLTYYAATSTDGKDATTVALSPSTLV
GGNPESVYDDFSAFLSDVKVDAGKELTRFAKKAERLIDGRDASSILTFYTKSSVDQYKDMAANEPNKLWDIVTGDAEE

The query sequence (length=238) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 4iu2:B 238 238 1.0000 1.0000 1.0000 1.30e-172 4iu3:B, 4wkz:A
2 8ajy:B 84 95 0.1555 0.4405 0.3895 1.07e-06 8ajy:D
3 8ajy:B 84 29 0.0588 0.1667 0.4828 0.32 8ajy:D
4 8ajy:B 84 28 0.0462 0.1310 0.3929 9.9 8ajy:D
5 4f2f:A 100 19 0.0462 0.1100 0.5789 0.87
6 2qag:B 246 85 0.0966 0.0935 0.2706 2.3
7 5cxw:A 376 138 0.1429 0.0904 0.2464 3.2
8 6lpf:B 1006 104 0.1218 0.0288 0.2788 4.0 6kid:A, 6kie:A, 6kqy:A, 6kr7:A, 6lpf:A, 6lr6:A, 6lr6:B
9 3kx2:B 755 128 0.1429 0.0450 0.2656 6.1 5i8q:A, 5i8q:B, 5jpt:A, 5jpt:B, 3kx2:A, 2xau:A, 2xau:B, 5y88:W
10 3pyz:A 410 83 0.1092 0.0634 0.3133 6.5 3n2a:A, 3qcz:A
11 8qxc:L 214 56 0.0756 0.0841 0.3214 7.1 1axs:L, 1axs:A, 1d6v:L, 8qxc:B, 6xli:B, 6xli:D, 6xli:L, 6xtg:L, 6xuk:L
12 2vh3:B 113 20 0.0378 0.0796 0.4500 7.5 2vh3:A
13 6s8r:A 167 60 0.0714 0.1018 0.2833 7.8

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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