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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
NTVTSAVKTQYVEIESVDGFYFNTEDKFDTAQIKKAVLHTVYNEGYTGDDGVAVVLREYESEPVDITAELTFGDATPANT
YKAVENKFDYEIPVYYNNATLKDAEGNDATVTVYIGLKGDTDLNNIVDGRDATATLTYYAATSTDGKDATTVALSPSTLV
GGNPESVYDDFSAFLSDVKVDAGKELTRFAKKAERLIDGRDASSILTFYTKSSVDQYKDMAANEPNKLWDIVTGDA

The query sequence (length=236) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 4iu2:B 238 236 1.0000 0.9916 1.0000 5.51e-171 4iu3:B, 4wkz:A
2 8ajy:B 84 95 0.1568 0.4405 0.3895 1.11e-06 8ajy:D
3 8ajy:B 84 29 0.0593 0.1667 0.4828 0.33 8ajy:D
4 8ajy:B 84 28 0.0466 0.1310 0.3929 9.8 8ajy:D
5 4f2f:A 100 19 0.0466 0.1100 0.5789 0.88
6 2qag:B 246 85 0.0975 0.0935 0.2706 2.3
7 5cxw:A 376 138 0.1441 0.0904 0.2464 3.4
8 6lpf:B 1006 104 0.1229 0.0288 0.2788 3.5 6kid:A, 6kie:A, 6kqy:A, 6kr7:A, 6lpf:A, 6lr6:A, 6lr6:B
9 3kx2:B 755 128 0.1441 0.0450 0.2656 5.1 5i8q:A, 5i8q:B, 5jpt:A, 5jpt:B, 3kx2:A, 2xau:A, 2xau:B, 5y88:W
10 3pyz:A 410 83 0.1102 0.0634 0.3133 6.3 3n2a:A, 3qcz:A
11 2vh3:B 113 20 0.0381 0.0796 0.4500 7.0 2vh3:A
12 8qxc:L 214 56 0.0763 0.0841 0.3214 7.5 1axs:L, 1axs:A, 1d6v:L, 8qxc:B, 6xli:B, 6xli:D, 6xli:L, 6xtg:L, 6xuk:L
13 6s8r:A 167 60 0.0720 0.1018 0.2833 8.5

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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