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BioLiP
>protein
NTVSRQEIRLGLPSKGRMSSDTLDLLKDCQLSVKQYVAQIPQISNLEVWFQRPKDIVRKLLSGDLDLGIVGLDVLTEFGQ
GNEDLIVVHEALEYGDCRLSIAIPQYGIFENVNSLEELAKMPQWTEDKPLRVATGFTYLGPKFMKDNGIKHVAFSTADGA
LEAAPAMGIADAILDLVSSGTTLKENNLKEIEGGTVLESQAALVASRRSMIGRKGVLETTHEMLERLEAHLRAMGQFTVV
ANMRGSSAEEVAERVLSQPSLAGLQGPTVSPVFCKRDGKVSADYYAIVICVPKKALYKSIQQLRAIGGSGVLVSPLTYIF
DEETPRWRQLLSKLG

The query sequence (length=335) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 6czm:E 342 340 1.0000 0.9795 0.9853 0.0 6czm:A, 6czm:C, 6czm:D
2 6czm:F 315 335 0.9254 0.9841 0.9254 0.0 6czm:B
3 2vd3:A 289 323 0.3104 0.3599 0.3220 1.46e-32 2vd3:B
4 4yb6:A 296 320 0.2866 0.3243 0.3000 1.32e-28 5ub9:A, 5ub9:B, 5ubg:A, 5ubg:B, 5ubh:A, 5ubh:B, 5ubi:A, 5ubi:B, 4yb5:A, 4yb5:E, 4yb5:B, 4yb5:C, 4yb5:F, 4yb5:D, 4yb6:E, 4yb6:B, 4yb6:C, 4yb6:F, 4yb6:D, 4yb7:B, 4yb7:C, 4yb7:D, 4yb7:E, 4yb7:I, 4yb7:K, 4yb7:A, 4yb7:F, 4yb7:G, 4yb7:H, 4yb7:J, 4yb7:L
5 1h3d:A 288 325 0.2448 0.2847 0.2523 1.25e-24 1q1k:A
6 7dah:C 288 328 0.2806 0.3264 0.2866 1.54e-23 7dah:F
7 5lht:A 284 315 0.2537 0.2993 0.2698 1.68e-19 5lhu:A, 1nh8:A, 5u99:A
8 1z7n:F 205 186 0.1552 0.2537 0.2796 3.44e-11 1z7m:G, 1z7m:E, 1z7m:H, 1z7n:E, 1z7n:G, 1z7n:H
9 1usy:G 203 222 0.1642 0.2709 0.2477 9.48e-10 1usy:F, 1usy:E, 1usy:H
10 6fca:A 209 188 0.1522 0.2440 0.2713 2.92e-08 6fct:A, 6fcw:A, 6fcy:A, 6fd9:A, 6ftt:E, 6ftt:H, 6ftt:G, 6ftt:F, 6fu2:C, 6fu2:D, 6fu7:C, 6fu7:D, 6fua:C, 6fua:D, 6r02:E, 6r02:F, 6r02:G, 6r02:H, 7z6r:C, 7z6r:D, 7z8u:A
11 7pua:Fi 475 80 0.0657 0.0463 0.2750 0.87
12 7pub:Fi 469 76 0.0627 0.0448 0.2763 1.4
13 7x11:A 564 115 0.0925 0.0550 0.2696 2.6 7x11:B, 7x11:C, 7x11:D, 7x12:A, 7x12:B, 7x12:C, 7x12:D
14 7edd:A 1394 68 0.0507 0.0122 0.2500 3.7 5xyr:A
15 5xxz:B 1310 68 0.0507 0.0130 0.2500 3.7
16 3nie:A 369 89 0.0597 0.0542 0.2247 3.9 3nie:B
17 5xya:A 1358 68 0.0507 0.0125 0.2500 3.9 5xxz:A
18 7xi4:A 283 86 0.0687 0.0813 0.2674 5.0 8g4a:A, 8g4a:B, 5nj8:B, 5sy7:A, 5v0l:A, 7xhv:A, 4zph:A, 4zpk:A
19 6vjb:A 1346 50 0.0418 0.0104 0.2800 5.9
20 4zsi:A 166 84 0.0776 0.1566 0.3095 5.9 4zsi:B, 4zsk:A, 4zsk:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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