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BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
NTSTLLEKALQIAVKAHSGQIDKAGSAYIFHPIRVSNRCSTDDERIVALLHDTIEDTEVTAEYLLMEGFPRNIVDAILSV
TRNEDESYDDFIKRSRLNPIGRQVKLHDLEDNMDITRLNELTEKDIYRLNKYIKAYKYLKEH

The query sequence (length=142) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 7smg:B 144 142 1.0000 0.9861 1.0000 5.03e-103 7smg:A, 7smg:C, 7smg:D
2 7oiw:A 327 59 0.1972 0.0856 0.4746 3.13e-07 7oiw:B
3 7qpr:D 689 83 0.2113 0.0435 0.3614 4.56e-07 7qpr:A, 7qpr:B, 7qpr:C, 7qps:A
4 1vj7:A 326 84 0.2042 0.0890 0.3452 1.36e-06 1vj7:B
5 7ohg:A 351 81 0.2042 0.0826 0.3580 8.12e-06 6s2t:A, 6s2u:A, 6s2v:A
6 6yxa:A 536 83 0.2113 0.0560 0.3614 1.22e-05 8acu:A, 8acu:B
7 6s2v:C 336 108 0.2324 0.0982 0.3056 1.57e-05 6s2v:B
8 5xnx:D 321 43 0.1479 0.0654 0.4884 0.001 5xnx:C
9 3nr1:A 178 68 0.1972 0.1573 0.4118 0.003 3nr1:B, 5vxa:A, 5vxa:B
10 8ro0:A 2231 61 0.1479 0.0094 0.3443 0.046 8ro1:A
11 7qoc:A 193 66 0.1690 0.1244 0.3636 0.092 7qoc:B, 7qod:A, 7qod:B
12 3nqw:A 178 68 0.1690 0.1348 0.3529 0.22 3nqw:B
13 2ijd:1 644 68 0.1479 0.0326 0.3088 0.40 4dcd:A, 2ijd:2, 2ily:A, 2ilz:A, 2im0:A, 2im1:A, 2im2:A, 2im3:A, 4k4s:A, 4k4s:E, 4k4t:A, 4k4t:E, 4k4u:A, 4k4u:E, 4k4v:A, 4k4v:E, 4k4w:A, 4k4w:E, 3ol6:A, 3ol6:E, 3ol6:I, 3ol6:M, 3ol7:A, 3ol7:E, 3ol7:I, 3ol7:M, 3ol8:A, 3ol8:E, 3ol8:I, 3ol8:M, 3ol9:A, 3ol9:E, 3ol9:I, 3ol9:M, 3ola:A, 3ola:E, 3ola:I, 3ola:M, 3olb:A, 3olb:E, 3olb:I, 3olb:M, 1ra7:A
14 5xe0:A 457 41 0.0986 0.0306 0.3415 0.47 5zit:A
15 5tv6:A 239 79 0.1690 0.1004 0.3038 0.51 5tv6:B, 5tv8:A, 5tv8:B, 5tva:A, 5tva:B
16 6z3o:AAA 178 101 0.1761 0.1404 0.2475 0.57 6yvc:A, 6yvc:B, 6yvc:C, 6yvc:D, 6z3o:BBB, 6z3o:CCC, 6z3o:DDD
17 1rdr:A 316 68 0.1479 0.0665 0.3088 0.69
18 8y6o:C 2227 61 0.1408 0.0090 0.3279 1.5 8h6e:5B, 8h6j:5B, 8qp9:A, 6qw6:5A, 6qx9:5A, 8qxd:A, 8r08:A
19 5z56:A 2232 61 0.1408 0.0090 0.3279 1.5 7aav:A, 7abf:A, 8ch6:a, 7dvq:A, 8i0s:A, 5z58:A
20 8c6j:A 2261 61 0.1408 0.0088 0.3279 1.5 6ah0:A, 6ahd:A, 8bc8:J, 6ff4:A, 6ff7:A, 9fmd:A, 8i0r:A, 8i0t:A, 8i0w:A, 6icz:A, 6id0:A, 6id1:A, 4jk9:A, 4jk9:B, 4jka:A, 4jka:B, 5mqf:A, 5o9z:A, 6qdv:A, 8qoz:A, 8qpa:A, 8qpb:A, 8qpk:A, 8r09:A, 8r0a:A, 8r0b:A, 8rm5:A, 8ro2:A, 7w59:A, 7w5a:A, 7w5b:A, 5xjc:A, 5yzg:A, 6zym:A
21 5z57:A 1978 61 0.1408 0.0101 0.3279 1.5
22 8i0p:A 2149 61 0.1408 0.0093 0.3279 1.5 8q7q:A, 8q7v:A, 8q7w:A
23 8q7x:A 1914 61 0.1408 0.0104 0.3279 1.5
24 8qp8:A 1918 61 0.1408 0.0104 0.3279 1.5
25 9c9y:A 612 89 0.2042 0.0474 0.3258 3.5 9ca0:A, 9ca1:A
26 3cdu:A 468 41 0.0915 0.0278 0.3171 3.9 3cdw:A, 4k4x:A, 4k4x:E, 4k4x:I, 4k4x:M, 4k4y:A, 4k4y:E, 4k4y:I, 4k4y:M, 4k4z:A, 4k4z:E, 4k4z:I, 4k4z:M, 4y2a:A, 4y34:A
27 2wnr:B 222 36 0.0845 0.0541 0.3333 4.5 2wnr:D, 2wnr:F
28 7qoe:A 187 153 0.2606 0.1979 0.2418 4.6
29 8h6k:5B 2253 60 0.1408 0.0089 0.3333 6.7 8h6l:5B, 8i0u:A, 8i0v:A, 8q7n:A, 8qo9:A, 8qpe:A, 7qtt:a, 8qzs:A
30 7abg:A 2174 60 0.1408 0.0092 0.3333 7.0 7abi:A, 8q91:A, 8rc0:A
31 4b10:A 385 42 0.0915 0.0338 0.3095 9.0 4a95:A, 4a95:B, 4a95:C, 4b10:B, 4b10:C, 4b11:A, 4b11:B, 4b11:C, 4b12:A, 4b12:B, 4b12:C, 4b13:A, 4b13:B, 4b13:C, 4b14:A, 4b14:B, 4b14:C, 6b1l:A, 4bbh:A, 4bbh:B, 4bbh:C, 4c68:A, 4c68:B, 4c68:C, 4cae:A, 4cae:B, 4cae:C, 4caf:A, 4caf:B, 4caf:C, 8fbq:A, 5g1z:A, 5g1z:B, 5g1z:C, 5g22:A, 5g22:B, 5g22:C, 6may:A, 6may:B, 6may:C, 6maz:A, 6maz:B, 6maz:C, 6mb0:A, 6mb0:B, 6mb0:C, 6mb1:A, 6mb1:B, 6mb1:C, 6nxg:A, 6nxg:B, 6nxg:C, 5o48:A, 5o48:B, 5o48:C, 5o4v:A, 5o4v:B, 5o4v:C, 6tw5:AAA, 6tw5:BBB, 6tw5:CCC, 6tw6:AAA, 6tw6:BBB, 6tw6:CCC, 4ufv:A, 4ufv:B, 4ufv:C, 4ufw:A, 4ufw:B, 4ufw:C, 4ufx:A, 4ufx:B, 4ufx:C, 5v0w:A, 5v0w:B, 5v0w:C, 5v0x:A, 5v0x:B, 5v0x:C, 8vka:A, 8vka:B, 8vka:C, 8vkb:A, 8vkb:B, 8vkb:C, 2ync:A, 2ync:B, 2ync:C, 2ynd:A, 2ynd:B, 2ynd:C, 2yne:A, 2yne:B, 2yne:C

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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