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BioLiP
>protein
NTRLRIAIQKSGRLSKESIELLSECGVKMHIHEQSLIAFSTNLPIDILRVRDDDIPGLIFDGVVDLGIIGENVLEENELE
RQSLGENPSYKLLKKLDFGYCRLSLALPQENKFQNLKDFEGLRIATSYPQLLKRFMKENGINYKNCTLTGSVEVAPRANL
ADAICDLVSSGATLQANNLKEVKVIYESRACLIQKENALSKEKQALVDKIMLRVAGVMQARE

The query sequence (length=222) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 4yb6:A 296 222 1.0000 0.7500 1.0000 3.22e-163 5ub9:A, 5ub9:B, 5ubg:A, 5ubg:B, 5ubh:A, 5ubh:B, 5ubi:A, 5ubi:B, 4yb5:A, 4yb5:E, 4yb5:B, 4yb5:C, 4yb5:F, 4yb5:D, 4yb6:E, 4yb6:B, 4yb6:C, 4yb6:F, 4yb6:D, 4yb7:B, 4yb7:C, 4yb7:D, 4yb7:E, 4yb7:I, 4yb7:K, 4yb7:A, 4yb7:F, 4yb7:G, 4yb7:H, 4yb7:J, 4yb7:L
2 1h3d:A 288 221 0.6351 0.4896 0.6380 3.50e-103 1q1k:A
3 7dah:C 288 220 0.5811 0.4479 0.5864 2.10e-92 7dah:F
4 2vd3:A 289 220 0.3198 0.2457 0.3227 7.60e-31 2vd3:B
5 6czm:E 342 222 0.3243 0.2105 0.3243 7.84e-29 6czm:A, 6czm:C, 6czm:D
6 5lht:A 284 219 0.2793 0.2183 0.2831 7.48e-22 5lhu:A, 1nh8:A, 5u99:A
7 6czm:F 315 212 0.2973 0.2095 0.3113 3.31e-19 6czm:B
8 6fca:A 209 211 0.2973 0.3158 0.3128 2.19e-18 6fct:A, 6fcw:A, 6fcy:A, 6fd9:A, 6ftt:E, 6ftt:H, 6ftt:G, 6ftt:F, 6fu2:C, 6fu2:D, 6fu7:C, 6fu7:D, 6fua:C, 6fua:D, 6r02:E, 6r02:F, 6r02:G, 6r02:H, 7z6r:C, 7z6r:D, 7z8u:A
9 1z7n:F 205 192 0.2523 0.2732 0.2917 2.67e-17 1z7m:G, 1z7m:E, 1z7m:H, 1z7n:E, 1z7n:G, 1z7n:H
10 1usy:G 203 204 0.2748 0.3005 0.2990 1.40e-16 1usy:F, 1usy:E, 1usy:H
11 6wzg:R 379 58 0.0856 0.0501 0.3276 0.038 7d3s:R, 6wi9:R
12 4oua:B 557 142 0.1712 0.0682 0.2676 0.092 5m6b:B, 5m6b:A, 5m6b:D, 4oua:A
13 7r5v:N 297 85 0.1126 0.0842 0.2941 0.35 7yyh:N
14 2xdg:A 89 44 0.0541 0.1348 0.2727 1.4 2xdg:B
15 3cg3:A 315 61 0.0811 0.0571 0.2951 2.0
16 1uoc:A 263 59 0.0811 0.0684 0.3051 2.1 1uoc:B
17 6jv0:A 273 74 0.0946 0.0769 0.2838 3.3 6juz:A, 6jv1:A
18 6lrg:B 681 74 0.0946 0.0308 0.2838 4.2 6lrg:A, 6lrh:A, 6lrh:B
19 4b98:A 441 20 0.0405 0.0204 0.4500 7.8 4b98:B, 4b98:C, 4b98:D, 4b9b:A, 4b9b:B, 4b9b:C, 4b9b:D, 4b9b:E, 4b9b:F, 4b9b:G, 4b9b:H, 4bq0:A, 4bq0:B, 4bq0:C, 4bq0:D
20 1t47:A 362 69 0.0766 0.0470 0.2464 8.0 1t47:B
21 4ipn:E 463 33 0.0541 0.0259 0.3636 9.1 4ipn:B
22 3b0v:C 315 53 0.0856 0.0603 0.3585 9.8 3b0p:A, 3b0p:B, 3b0u:X, 3b0u:Y, 3b0v:D

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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