Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
NTRLRIAIQKSGRLSKESIELLSECGVKMHIHEQSLIAFSTNLPIDILRVRDDDIPGLIFDGVVDLGIIGENVLEENELE
RQSLGENPSYKLLKKLDFGYCRLSLALPQENKFQNLKDFEGLRIATSYPQLLKRFMKENGINYKNCTLTGSVEVAPRANL
ADAICDLVSSGATLQANNLKEVKVIYESRACLIQKENALSKEKQALVDKIMLRVAGV

The query sequence (length=217) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 4yb6:A 296 217 1.0000 0.7331 1.0000 3.60e-159 5ub9:A, 5ub9:B, 5ubg:A, 5ubg:B, 5ubh:A, 5ubh:B, 5ubi:A, 5ubi:B, 4yb5:A, 4yb5:E, 4yb5:B, 4yb5:C, 4yb5:F, 4yb5:D, 4yb6:E, 4yb6:B, 4yb6:C, 4yb6:F, 4yb6:D, 4yb7:B, 4yb7:C, 4yb7:D, 4yb7:E, 4yb7:I, 4yb7:K, 4yb7:A, 4yb7:F, 4yb7:G, 4yb7:H, 4yb7:J, 4yb7:L
2 1h3d:A 288 216 0.6313 0.4757 0.6343 5.49e-100 1q1k:A
3 7dah:C 288 215 0.5806 0.4375 0.5860 3.93e-90 7dah:F
4 2vd3:A 289 217 0.3226 0.2422 0.3226 5.13e-30 2vd3:B
5 6czm:E 342 222 0.3318 0.2105 0.3243 7.30e-29 6czm:A, 6czm:C, 6czm:D
6 5lht:A 284 218 0.2857 0.2183 0.2844 8.27e-22 5lhu:A, 1nh8:A, 5u99:A
7 6czm:F 315 212 0.3041 0.2095 0.3113 3.52e-19 6czm:B
8 6fca:A 209 211 0.3041 0.3158 0.3128 1.65e-18 6fct:A, 6fcw:A, 6fcy:A, 6fd9:A, 6ftt:E, 6ftt:H, 6ftt:G, 6ftt:F, 6fu2:C, 6fu2:D, 6fu7:C, 6fu7:D, 6fua:C, 6fua:D, 6r02:E, 6r02:F, 6r02:G, 6r02:H, 7z6r:C, 7z6r:D, 7z8u:A
9 1z7n:F 205 192 0.2581 0.2732 0.2917 2.35e-17 1z7m:G, 1z7m:E, 1z7m:H, 1z7n:E, 1z7n:G, 1z7n:H
10 1usy:G 203 204 0.2811 0.3005 0.2990 1.20e-16 1usy:F, 1usy:E, 1usy:H
11 6wzg:R 379 58 0.0876 0.0501 0.3276 0.037 7d3s:R, 6wi9:R
12 4oua:B 557 142 0.1751 0.0682 0.2676 0.080 5m6b:B, 5m6b:A, 5m6b:D, 4oua:A
13 7r5v:N 297 86 0.1152 0.0842 0.2907 0.30 7yyh:N
14 2xdg:A 89 44 0.0553 0.1348 0.2727 1.4 2xdg:B
15 1uoc:A 263 59 0.0829 0.0684 0.3051 1.9 1uoc:B
16 3cg3:A 315 61 0.0829 0.0571 0.2951 2.0
17 6jv0:A 273 74 0.0968 0.0769 0.2838 3.0 6juz:A, 6jv1:A
18 6lrg:B 681 74 0.0968 0.0308 0.2838 4.0 6lrg:A, 6lrh:A, 6lrh:B
19 4b98:A 441 20 0.0415 0.0204 0.4500 7.5 4b98:B, 4b98:C, 4b98:D, 4b9b:A, 4b9b:B, 4b9b:C, 4b9b:D, 4b9b:E, 4b9b:F, 4b9b:G, 4b9b:H, 4bq0:A, 4bq0:B, 4bq0:C, 4bq0:D
20 1t47:A 362 69 0.0783 0.0470 0.2464 7.9 1t47:B
21 4ipn:E 463 33 0.0553 0.0259 0.3636 9.0 4ipn:B
22 3b0v:C 315 53 0.0876 0.0603 0.3585 9.3 3b0p:A, 3b0p:B, 3b0u:X, 3b0u:Y, 3b0v:D

[Back]
Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

    • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218