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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
NTPEHMTAVVQRYVAALNAGDLDGIVALFADDATVYETSQDRTYTGTAAIREFYANSLKLPLAVELTQEVRANRNEAAFA
FTVSFEYQGRKTVVAPIDHFRFNGAGKVVSMRALFGEKNIHAGA

The query sequence (length=124) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 6uae:C 125 124 1.0000 0.9920 1.0000 6.77e-89 6uae:A, 6uae:B, 6uae:D
2 1buq:A 125 124 0.8871 0.8800 0.8871 3.98e-76 1buq:B, 3m8c:B, 3m8c:D, 3m8c:C, 3myt:A, 3myt:C, 3nbr:A, 3nhx:A, 3nuv:A, 3nuv:B, 1ogz:A, 1ohp:A, 1ohp:B, 1ohp:C, 1ohp:D, 1ohs:A, 1ohs:B, 1ohs:C, 3ov4:A, 3ov4:B, 3ov4:C, 1qjg:A, 1qjg:B, 1qjg:C, 1qjg:D, 1qjg:E, 1qjg:F, 5ugi:A
3 6uad:A 121 122 0.8306 0.8512 0.8443 1.95e-69
4 7ry4:B 130 121 0.2903 0.2769 0.2975 1.00e-11 5ai1:A, 6c17:A, 6c1j:A, 6c1x:A, 3cpo:A, 1cqs:A, 1cqs:B, 1e3r:A, 1e3r:B, 1e3v:A, 1e3v:B, 3fzw:A, 3fzw:B, 5g2g:A, 5g2g:B, 1gs3:A, 2inx:A, 3ipt:A, 3ipt:B, 3ipt:C, 3ipt:D, 5kp1:A, 5kp1:B, 5kp1:C, 5kp1:D, 5kp3:A, 5kp3:B, 5kp4:B, 1ogx:A, 1ogx:B, 1oh0:A, 1oh0:B, 1oho:A, 3ows:A, 3ows:B, 3ows:C, 3ows:D, 3owu:A, 3owu:B, 3owu:C, 3owu:D, 3owy:A, 3owy:B, 3owy:C, 3owy:D, 3owy:E, 3owy:H, 2pzv:A, 2pzv:B, 2pzv:C, 2pzv:D, 7rxf:A, 7ry4:A, 3t8n:D, 3t8n:F, 6tzd:B, 6tzd:A, 6u4i:A, 6u4i:B, 6ubq:A, 6ubq:B, 6ucn:A, 6ucn:B, 6ucy:B, 6ucy:A, 6ufs:B, 3vgn:A, 3vgn:B, 1w6y:A
5 6p44:B 117 120 0.3387 0.3590 0.3500 1.26e-11 6p44:A
6 4cdl:A 126 121 0.2500 0.2460 0.2562 8.14e-07
7 8r2b:A 130 114 0.2581 0.2462 0.2807 0.001 8r2e:A
8 5aih:A 125 52 0.1855 0.1840 0.4423 0.008 5aih:B, 5aii:F
9 3f8h:A 137 27 0.0968 0.0876 0.4444 0.12
10 5ui2:A 316 58 0.1371 0.0538 0.2931 0.23 5ui2:B
11 5hgr:A 315 47 0.1290 0.0508 0.3404 0.34 5hgr:B
12 3ijd:A 286 61 0.1371 0.0594 0.2787 1.0 3ijd:B
13 4rzm:B 283 39 0.1210 0.0530 0.3846 1.0 3rga:A, 4rzm:A
14 2fj0:A 530 103 0.1532 0.0358 0.1845 1.2
15 7zsg:1 314 56 0.1452 0.0573 0.3214 1.3 3mg1:A, 3mg1:B, 3mg2:A, 3mg2:B, 3mg3:A, 3mg3:B, 7sc9:BH, 7sc9:CQ, 7sc9:DI, 7sc9:EA, 7scb:BH, 7scc:AS, 7scc:BP, 6t6k:A, 6t6m:A, 6t6o:A, 8to2:B, 8tpj:B, 5tuw:A, 5tuw:B, 5tuw:C, 5tuw:D, 5tuw:E, 5tuw:F, 5tux:A, 5tv0:A, 4xb4:A, 4xb4:B, 4xb5:A, 7zsf:A, 7zsh:1, 7zsi:1, 7zsj:1, 7zxv:A
16 1v83:A 245 55 0.1532 0.0776 0.3455 1.3 1v83:B, 1v84:A, 1v84:B
17 7ekr:B 309 54 0.1452 0.0583 0.3333 1.4 7ekr:A
18 6pq1:A 320 54 0.1290 0.0500 0.2963 2.2
19 7w02:A 1566 22 0.0806 0.0064 0.4545 4.1
20 8tj5:P 1641 59 0.1452 0.0110 0.3051 4.3 8tj5:N
21 7mq8:NN 42 26 0.0806 0.2381 0.3846 4.4 7mq9:NN
22 6jzb:A 251 38 0.1048 0.0518 0.3421 4.8
23 5gan:A 2196 48 0.0968 0.0055 0.2500 5.0 5gam:A, 5mps:A, 5mq0:A
24 7dco:A 2205 48 0.0968 0.0054 0.2500 5.0 7b9v:A, 5gm6:A, 3jcm:A, 5lj5:A, 5zwm:A, 5zwo:A
25 1sjw:A 142 124 0.2661 0.2324 0.2661 8.4
26 6j6g:A 1913 26 0.0726 0.0047 0.3462 9.9 5gmk:A, 6j6h:A, 6j6n:A, 6j6q:A, 5y88:A
27 5lqw:A 2130 26 0.0726 0.0042 0.3462 10.0

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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