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BioLiP
>protein
NTLYVSQLNEKINMQRLRVNLFLLFATFGEVLKVSMNFKKQRGQAFITMRTIDQASLAQISLNGERFFGKPLKVEFSKSE
TKTL

The query sequence (length=84) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 7b9v:Y 88 84 1.0000 0.9545 1.0000 1.30e-56 6bk8:r, 7dco:p, 6exn:Y, 6g90:Y, 5gmk:a, 6j6g:a, 6j6h:a, 6j6n:a, 6j6q:a, 5lj3:Y, 5lj5:Y, 5mq0:Y, 5nrl:Y, 7oqb:Y, 7oqe:Y, 5wsg:X, 5y88:p, 5ylz:p, 5zwm:p, 5zwo:p
2 3jb9:k 89 84 0.3929 0.3708 0.3929 7.38e-16
3 8ro1:p 76 77 0.3571 0.3947 0.3896 2.65e-14
4 7abg:B 169 85 0.3214 0.1598 0.3176 6.59e-14 7a5p:X, 1a9n:B, 1a9n:D, 7abi:B, 6ah0:p, 6ahd:p, 8c6j:Y, 8ch6:s, 7evo:G, 9fmd:p, 8h6e:2C, 8h6j:2C, 8h6k:2C, 8h6l:2C, 8hk1:G, 8i0p:p, 8i0r:p, 8i0s:p, 8i0t:p, 8i0u:p, 8i0v:p, 8i0w:p, 6icz:p, 6id0:p, 6id1:p, 5mqf:X, 6qdv:Y, 8qo9:2B, 6qx9:2B, 8qxd:2B, 8qzs:2B, 8r08:2B, 8r09:2B, 8r0a:2B, 8r0b:2B, 8rm5:2B, 7vpx:G, 7w59:p, 7w5a:p, 7w5b:p, 5xjc:p, 6y53:b, 6y5q:b, 5yzg:p, 5z56:p, 5z57:p, 5z58:p
5 4pkd:B 240 85 0.3214 0.1125 0.3176 1.39e-13 1aud:A, 7b0y:c, 3bo2:A, 3bo3:A, 3bo4:A, 4c4w:A, 4c4w:E, 3cul:A, 3cul:B, 3cun:A, 3cun:B, 7d7v:C, 5ddo:G, 5ddo:C, 5ddp:D, 5ddp:C, 5ddq:D, 5ddq:C, 5ddr:D, 5ddr:C, 7dlz:A, 7dlz:B, 1drz:A, 7dwh:A, 7dwh:B, 1dz5:A, 1dz5:B, 3egz:A, 5fj4:A, 5fj4:E, 3g8s:A, 3g8s:B, 3g8s:C, 3g8s:D, 3g8t:A, 3g8t:B, 3g8t:C, 3g8t:D, 3g96:A, 3g96:B, 3g96:C, 3g96:D, 3g9c:A, 3g9c:B, 3g9c:C, 3g9c:D, 8gxb:C, 8gxb:D, 8gxb:F, 8gxc:C, 8gxc:D, 8gxc:F, 3hhn:B, 3hhn:D, 3iin:A, 3irw:P, 3iwn:C, 3iwn:D, 8jy0:A, 8jy0:C, 8jy0:E, 3k0j:A, 3k0j:B, 3l3c:A, 3l3c:B, 3l3c:C, 3l3c:D, 6las:E, 6las:D, 6las:C, 6lau:E, 6lau:D, 6lau:C, 6lax:D, 6lax:E, 6lax:C, 6laz:D, 6laz:E, 6laz:C, 1m5k:C, 1m5k:F, 1m5o:C, 1m5o:F, 1m5p:C, 1m5p:F, 1m5v:C, 1m5v:F, 3mum:P, 3mur:P, 3mut:P, 3muv:P, 3mxh:P, 2nz4:A, 2nz4:B, 2nz4:C, 2nz4:D, 2oih:A, 2oj3:A, 3p49:B, 4pr6:A, 4prf:A, 7qr3:A, 7qr3:B, 7qr4:A, 6qx9:1A, 3r1h:A, 3r1h:D, 3r1l:A, 3r1l:D, 1sj3:P, 1sj4:P, 1sjf:A, 6sqn:A, 6sqn:B, 6sqn:C, 6sqq:AAA, 6sqq:BBB, 6sqq:CCC, 1u6b:A, 3ucu:P, 3ucz:P, 3ud3:P, 3ud4:P, 1urn:A, 1urn:B, 1urn:C, 1vbx:A, 1vby:A, 1vbz:A, 1vc0:A, 1vc5:A, 1vc6:A, 7vpx:M, 4w90:B, 4w92:B, 1zzn:A
6 6xh2:A 93 83 0.2976 0.2688 0.3012 3.68e-12 6cmn:A, 3k0j:D, 3k0j:C, 6xh0:A, 6xh1:A, 6xh3:A
7 6f4h:C 96 84 0.3690 0.3229 0.3690 1.05e-11 6f4g:B, 6f4g:E, 6f4h:A, 6f4h:E
8 2adc:A 208 84 0.3690 0.1490 0.3690 1.95e-09
9 2adc:A 208 82 0.3333 0.1346 0.3415 0.001
10 2fy1:A 108 79 0.3095 0.2407 0.3291 1.33e-05
11 6gd2:A 84 60 0.2738 0.2738 0.3833 1.49e-05 6g2k:A, 6g2k:B, 6gc5:A, 6gc5:B, 6gc5:C, 6gc5:D, 6gd2:B, 6gd3:B, 6gd3:C
12 7zap:A 97 83 0.2976 0.2577 0.3012 1.39e-04
13 2xb2:D 89 79 0.2143 0.2022 0.2278 1.71e-04 2xb2:Z
14 2rra:A 99 62 0.2262 0.1919 0.3065 3.55e-04 2kxn:B
15 7zew:A 117 81 0.2500 0.1795 0.2593 4.66e-04 7zex:A
16 2mb0:B 95 77 0.2738 0.2421 0.2987 4.67e-04
17 7s7b:C 79 79 0.2976 0.3165 0.3165 0.001 7s7b:G, 7s7c:C
18 5mqf:o 223 80 0.2381 0.0897 0.2500 0.004 6id1:y, 7w59:y, 7w5a:y, 7w5b:y
19 7q33:A 93 86 0.3095 0.2796 0.3023 0.017 6pai:D, 6q0r:D, 6q0v:D, 6q0w:D, 6sj7:C, 6ud7:C, 6ue5:C
20 2mgz:A 94 60 0.2024 0.1809 0.2833 0.025
21 8i0v:4 161 80 0.2143 0.1118 0.2250 0.034
22 8i0v:4 161 77 0.2619 0.1366 0.2857 0.069
23 2adb:A 127 60 0.2262 0.1496 0.3167 0.088 3zzy:A, 3zzy:B, 3zzz:A, 3zzz:B
24 2x1f:A 94 58 0.2143 0.1915 0.3103 0.13 2km8:B, 2x1a:A
25 2mqp:A 118 60 0.2024 0.1441 0.2833 0.15 7evr:A, 7evr:C
26 5x8p:v 190 80 0.2262 0.1000 0.2375 0.39 5mmj:v, 5mmm:v, 5x8r:v
27 2mkc:A 118 79 0.2381 0.1695 0.2532 0.46 2my3:A
28 6dg0:B 84 64 0.2143 0.2143 0.2812 0.48 6dg0:A
29 7dco:X 128 79 0.2381 0.1562 0.2532 0.51 5gm6:V, 5zwm:X
30 6ojt:B 481 60 0.2381 0.0416 0.3333 0.54 6ojr:A, 6ojt:A, 6ojw:B, 6ojw:A
31 4ed5:B 169 86 0.2738 0.1361 0.2674 0.72 4ed5:A
32 7evo:D 200 61 0.1667 0.0700 0.2295 1.1 8hk1:D, 6n3e:A, 6n3f:C, 6nsx:A
33 7qde:B 169 59 0.2143 0.1065 0.3051 1.3 7qdd:B
34 5kw6:A 201 54 0.1905 0.0796 0.2963 1.8 5kvy:A, 5kvy:B, 5kw1:A, 5kw1:B, 5kw6:B, 7q8a:B, 7q8a:A, 2qfj:A, 2qfj:B, 7z3x:A, 7z3x:B
35 2n82:B 104 57 0.1905 0.1538 0.2807 2.0 2err:A, 7vrl:B
36 2auv:A 85 44 0.1548 0.1529 0.2955 2.1
37 6snj:A 131 85 0.2262 0.1450 0.2235 2.2 6gbm:B
38 6x7l:A 303 47 0.1786 0.0495 0.3191 4.2 4hzo:A, 4hzp:A, 6x7m:A, 6x7n:A, 6x7o:A, 6x7p:A
39 2leb:A 101 78 0.2262 0.1881 0.2436 6.5 2lec:A
40 5t9g:C 811 41 0.1429 0.0148 0.2927 7.0 5t9g:A, 5t9g:B, 5t9g:D

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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