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BioLiP
>protein
NTDITALEKAQYPVVDRNPAFTKVVGNFSTLDYLRFSTITGISVTVGYLSGIKPGIKGPSMVTGGLIGLMGGFMYAYQNS
AGRLMGFFPNDGEVASYQK

The query sequence (length=99) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 7aqq:f 101 99 1.0000 0.9802 1.0000 9.37e-69 7a23:c, 7a24:c, 7ar7:f, 7ar8:f, 7arb:f, 8bef:f, 8bpx:f, 8bq5:f, 8bq6:f
2 6y79:X 167 89 0.2525 0.1497 0.2809 0.011 7zkp:X
3 6y2c:B 84 34 0.1313 0.1548 0.3824 0.52
4 1j4w:A 145 34 0.1313 0.0897 0.3824 1.0 6y2c:A
5 3cf4:A 766 25 0.1010 0.0131 0.4000 1.7
6 2xmr:A 281 54 0.1818 0.0641 0.3333 2.3
7 7og0:B 498 19 0.0909 0.0181 0.4737 8.6 7ofw:A, 7ofz:A, 7og0:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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