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BioLiP
>protein
NTDDIKALRVITAIKTPYLPDGRFDLEAYDDLVNIQIQNGAEGVIVGGTTGEGQLMSWDEHIMLIGHTVNCFGGSIKVIG
NTGSNSTREAIHATEQGFAVGMHAALHINPYYGKTSIEGLIAHFQSVLHMGPTIIYNVPGRTGQDIPPRAIFKLSQNPNL
AGVKECVGNKRVEEYTENGVVVWSGNDDECHDSRWDYGATGVISVTSNLVPGLMRKLMFEGRNSSLNSKLLPLMAWLFHE
PNPIGINTALAQLGVSRPVFRLPYVPLPLSKRLEFVKLVKEIGREHFVGEKDVQALDDDDFILIGRY

The query sequence (length=307) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 6vvh:BBB 313 307 0.9023 0.8850 0.9023 0.0 4dpq:A, 4dpq:B, 7mds:A, 7mds:B, 6vvh:AAA, 6vvh:CCC, 6vvh:DDD
2 4hnn:F 320 307 0.8208 0.7875 0.8208 0.0 4hnn:A, 4hnn:B, 4hnn:C, 4hnn:D, 4hnn:E, 4hnn:G, 4hnn:H
3 5ui3:C 306 304 0.6254 0.6275 0.6316 6.50e-143 5ui3:D, 5ui3:A, 5ui3:B
4 4dxv:A 291 288 0.3290 0.3471 0.3507 8.95e-49 3pue:B, 3pul:B, 3rk8:A, 3rk8:B, 3tak:A, 3tak:B, 3tce:A, 3tce:B, 3tdf:A, 3tdf:B, 3u8g:A, 3u8g:B
5 5ktl:A 295 285 0.3322 0.3458 0.3579 7.20e-47 5ktl:B
6 4pfm:A 295 271 0.3257 0.3390 0.3690 3.17e-45 4pfm:B
7 3puo:A 292 265 0.3160 0.3322 0.3660 4.17e-45 3puo:B, 3s8h:A, 3s8h:B
8 5t25:A 293 286 0.3257 0.3413 0.3497 6.83e-45 2ats:A, 2ats:B, 3i7s:A, 3i7s:B, 7jz8:A, 7jz8:B, 7jza:A, 7jza:B, 7jzb:A, 7jzb:B, 7jzg:A, 7jzg:B, 5t25:B, 1yxd:A, 1yxd:B
9 1o5k:A 295 289 0.3355 0.3492 0.3564 2.52e-44
10 4fha:A 307 293 0.2866 0.2866 0.3003 5.41e-40 4fha:B
11 3di1:B 291 267 0.2801 0.2955 0.3221 7.21e-39 3di1:A
12 7kkd:B 306 266 0.2964 0.2974 0.3421 4.43e-36 5f1u:A, 5f1u:B, 5f1u:C, 5f1u:D, 5f1v:A, 5f1v:C, 5f1v:B, 5f1v:D, 7kg2:A, 7kg2:C, 7kg2:B, 7kg2:D, 7kg2:E, 7kg2:F, 7kg5:A, 7kg5:B, 7kg5:C, 7kg5:E, 7kg5:F, 7kg9:A, 7kg9:E, 7kg9:B, 7kg9:C, 7kg9:D, 7kg9:F, 7kh4:A, 7kh4:F, 7kh4:B, 7kh4:C, 7kh4:D, 7kh4:E, 7kk1:A, 7kk1:B, 7kk1:C, 7kk1:D, 7kk1:E, 7kk1:F, 7kkd:A, 7kkd:F, 7kkd:E, 7kkd:C, 7kkd:D, 7kkg:A, 7kkg:D, 7kkg:B, 7kkg:E, 7kkg:C, 7kkg:F, 7kkt:A, 7kkt:F, 7kkt:B, 7kkt:E, 7kkt:C, 7kkt:D, 7kls:A, 7kls:F, 7kls:B, 7kls:C, 7kls:D, 7kls:E, 7klt:A, 7klt:C, 7klt:E, 7klt:F, 7kly:A, 7kly:D, 7kly:B, 7kly:C, 7kly:E, 7kly:F, 7km0:B, 7km0:C, 7km0:A, 7km0:D, 7km0:E, 7km0:F, 7km1:A, 7km1:B, 7km1:C, 7km1:D, 7km1:E, 7km1:F, 7kn9:A, 7kn9:B, 7kn9:C, 7kn9:D, 7kn9:E, 7kn9:F, 7knz:B, 7knz:C, 7knz:A, 7knz:D, 7knz:E, 7knz:F, 7ko3:A, 7ko3:B, 7ko3:C, 7ko3:D, 7ko3:E, 7ko3:F, 7kpc:A, 7kpc:B, 7kpc:C, 7kpc:D, 7kpc:E, 7kpc:F, 7kpe:B, 7kpe:C, 7kpe:A, 7kpe:D, 7kpe:E, 7kpe:F, 7kr7:A, 7kr7:E, 7kr7:B, 7kr7:C, 7kr7:D, 7kr7:F, 7kr8:B, 7kr8:D, 7kto:A, 7kto:B, 7kto:C, 7kto:D, 7kto:E, 7kto:F, 7ku6:D, 7kuz:A, 7kuz:F, 7kuz:B, 7kuz:C, 7kuz:D, 7kuz:E, 7kwf:B, 7kwf:F, 7kwf:A, 7kwf:C, 7kwf:D, 7kwf:E, 7kwn:B, 7kwp:A, 7kwp:B, 7kwp:C, 7kwp:D, 7kwp:E, 7kwp:F, 7kx1:A, 7kxg:A, 7kxg:C, 7kxg:B, 7kxg:D, 7kxg:E, 7kxg:F, 7kxh:A, 7kxh:D, 7kxh:B, 7kxh:C, 7kxh:E, 7kxh:F, 7kz2:A, 7kz2:D, 7kz2:B, 7kz2:C, 7kz2:E, 7kz2:F, 7lcf:A, 7lcf:B, 7lcf:F, 7lcf:C, 7lcf:D, 7lcf:I, 7lcf:E, 7lcf:G, 7lcf:H, 7lcf:J, 7lcf:K, 7lcf:L, 7m06:B, 7m06:C, 7m06:D, 4m19:A, 4m19:B, 4m19:C, 4m19:D, 4mlr:A, 4mlr:D, 4mlr:C, 4mlr:E, 4mlr:F, 4mlr:G, 4mlr:H, 6u01:B
13 5ud6:C 299 274 0.2932 0.3010 0.3285 2.86e-34 5ud6:A, 5ud6:B, 5ud6:D
14 7lvl:A 296 282 0.2932 0.3041 0.3191 6.18e-32 7lvl:B, 7lvl:C, 7lvl:E, 7lvl:D, 7lvl:F, 7mjf:A, 7mjf:B, 7mjf:C, 7mjf:D, 7mjf:E, 7mjf:F
15 5j5d:A 297 213 0.2280 0.2357 0.3286 7.44e-30 3l21:B, 1xxx:A, 1xxx:B, 1xxx:C, 1xxx:D, 1xxx:E, 1xxx:F, 1xxx:G, 1xxx:H
16 4i7w:A 294 263 0.2769 0.2891 0.3232 1.33e-29 4i7w:B
17 8u8w:A 297 298 0.2443 0.2525 0.2517 1.00e-16
18 3nev:A 298 224 0.1954 0.2013 0.2679 1.10e-16 3nev:B, 3nev:C, 3nev:D, 4oe7:A, 4oe7:B, 4oe7:C, 4oe7:D, 4onv:A, 4onv:B, 4onv:C, 4onv:D, 4ptn:A, 4ptn:B, 4ptn:C, 4ptn:D, 4u4m:A, 4u4m:B, 4u4m:C, 4u4m:D
19 2wpb:A 302 291 0.2378 0.2417 0.2509 1.99e-15 4bwl:A, 4bwl:B, 4bwl:C, 4bwl:D, 1fdy:A, 1fdy:B, 1fdy:C, 1fdy:D, 1fdz:A, 1fdz:B, 1fdz:C, 1fdz:D, 1hl2:A, 1hl2:B, 1hl2:C, 1hl2:D, 3lbc:D, 3lcw:A, 3lcw:B, 3lcw:C, 3lcw:D, 4uui:A, 4uui:B, 4uui:C, 4uui:D, 2wkj:C, 2wkj:D, 2wpb:B, 2wpb:C, 2wpb:D, 2xfw:A, 2xfw:B, 2xfw:C, 2xfw:D
20 5c55:A 307 273 0.1987 0.1987 0.2234 1.81e-12 5c55:B
21 3na8:A 291 264 0.2052 0.2165 0.2386 8.76e-12 3na8:B, 3na8:C, 3na8:D
22 4img:A 293 217 0.1726 0.1809 0.2442 1.58e-10 4imf:A, 4imf:B, 4img:B
23 6rb7:A 305 215 0.1564 0.1574 0.2233 3.00e-10 6rb7:B, 6rb7:E, 6rb7:F, 6rd1:A, 6rd1:B
24 2nuy:A 288 224 0.1759 0.1875 0.2411 5.84e-10 2nuy:B
25 4woq:C 290 125 0.1140 0.1207 0.2800 1.26e-09 4woq:D, 4woq:E, 4woq:F, 4woq:H, 4woz:B, 4woz:F
26 1f74:A 293 217 0.1629 0.1706 0.2304 1.96e-09 1f73:A, 1f73:B, 1f73:C, 1f73:D, 1f74:C, 1f7b:A, 1f7b:C
27 2r94:A 286 199 0.1726 0.1853 0.2663 3.24e-09 2r94:D, 2r94:B, 2r94:C
28 6g3z:A 293 227 0.1824 0.1911 0.2467 4.17e-08 6g3z:B, 6gt8:A, 6gt8:B, 6gv2:A, 6gv2:B, 6h2s:A, 6h2s:B, 6h2s:C, 6h2s:D, 6h7s:A, 6h7s:B, 1w3i:A, 1w3i:B, 1w3i:C, 1w3i:D, 1w3n:A, 1w3n:B, 1w3n:C, 1w3n:D, 1w3t:A, 1w3t:B, 1w3t:C, 1w3t:D
29 3qfe:A 305 206 0.1629 0.1639 0.2427 5.75e-08
30 8do5:B 324 163 0.1238 0.1173 0.2331 7.67e-06 8do5:A
31 5kzd:A 284 254 0.1759 0.1901 0.2126 0.006 5kzd:B, 5kzd:C, 5kzd:D
32 2fli:C 219 102 0.0945 0.1324 0.2843 0.26 2fli:A, 2fli:B, 2fli:D, 2fli:E, 2fli:F, 2fli:G, 2fli:H, 2fli:I, 2fli:J, 2fli:K, 2fli:L
33 5a22:A 2002 41 0.0489 0.0075 0.3659 0.92
34 6u1x:A 2059 41 0.0489 0.0073 0.3659 1.0
35 3zwm:H 253 64 0.0717 0.0870 0.3438 1.3 3i9j:A, 3i9j:B, 3i9k:B, 3i9l:A, 3i9o:A, 3i9o:B, 1r15:A, 1r15:B, 1r15:C, 1r15:D, 1r15:E, 1r15:F, 1r15:G, 1r15:H, 1r16:A, 1r16:B, 3zwm:A, 3zwm:B, 3zwm:C, 3zwm:D, 3zwm:E, 3zwm:F, 3zwm:G, 3zwn:A, 3zwn:B, 3zwo:A, 3zwo:B, 3zwo:C, 3zwo:E, 3zwo:F, 3zwo:G, 3zwo:H, 3zwp:A, 3zwp:B, 3zwp:C, 3zwp:D, 3zwp:E, 3zwp:F, 3zwp:G, 3zwp:H, 3zwv:A, 3zwv:H, 3zwv:B, 3zwv:C, 3zwv:D, 3zwv:E, 3zwv:F, 3zwv:G, 3zww:A, 3zww:B, 3zww:C, 3zww:D, 3zww:E, 3zww:F, 3zww:G, 3zww:H, 3zwx:A, 3zwx:B, 3zwx:C, 3zwx:D, 3zwx:E, 3zwx:F, 3zwx:G, 3zwx:H, 3zwy:A, 3zwy:B, 3zwy:C, 3zwy:D, 3zwy:E, 3zwy:F, 3zwy:G, 3zwy:H
36 7ojj:L 1785 126 0.1042 0.0179 0.2540 1.6
37 7ojk:L 1843 126 0.1042 0.0174 0.2540 1.7
38 5yyl:B 375 52 0.0456 0.0373 0.2692 3.3
39 7asd:AA 413 52 0.0456 0.0339 0.2692 4.3 7asd:BA, 7asd:CA, 7asd:DA, 7asd:EA, 7asd:FA, 7asd:GA, 7asd:HA, 5yyl:A
40 4xru:B 394 36 0.0489 0.0381 0.4167 4.4 4xru:E
41 2cdu:A 451 64 0.0684 0.0466 0.3281 5.4 2cdu:B
42 7osj:H 151 49 0.0423 0.0861 0.2653 7.6 7osf:H, 7osg:H, 7osh:H, 7osi:H, 7znq:L
43 3ogd:A 288 37 0.0521 0.0556 0.4324 7.9 3cvs:A, 3cvs:B, 3cvs:C, 3cvs:D, 3cvt:A, 3cvt:B, 3cvt:C, 3cvt:D, 3cw7:A, 3cw7:B, 3cw7:C, 3cw7:D, 3cwa:A, 3cwa:B, 3cwa:C, 3cwa:D, 3cws:A, 3cws:B, 3cws:C, 3cws:D, 3cwt:A, 3cwt:B, 3cwt:C, 3cwt:D, 3cwu:A, 3cwu:B, 3cwu:C, 3cwu:D, 3d4v:A, 3d4v:B, 3d4v:C, 3d4v:D, 1diz:B, 1diz:A, 3oh6:A, 3oh9:A, 1pvs:A, 1pvs:B
44 8snb:8K 322 43 0.0521 0.0497 0.3721 8.8
45 8hi5:A 647 56 0.0651 0.0309 0.3571 9.2

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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