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BioLiP
>protein
NSSCVFVSPIFRPSTTKAQVMELFAGVKVQRLRMYRQNFAYAYLDSPAAAKKFVEEKNGTEFRGHTLRVALSARSLEKLR
ARQEAANVVIAAHRHY

The query sequence (length=96) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 5osg:h 173 94 0.9583 0.5318 0.9787 2.22e-63 8a3w:Sh, 8a98:Sh, 8ovj:Sh, 8rxh:Sh, 8rxx:Sh
2 7ase:J 173 94 0.6562 0.3642 0.6702 9.17e-40 5opt:h
3 7ase:J 173 31 0.1250 0.0694 0.3871 2.3 5opt:h
4 8ova:Az 100 92 0.6354 0.6100 0.6630 1.21e-39
5 8ove:Az 43 68 0.3229 0.7209 0.4559 1.34e-08
6 4f02:A 175 71 0.1979 0.1086 0.2676 0.082 1cvj:A, 1cvj:B, 1cvj:C, 1cvj:D, 1cvj:E, 1cvj:F, 1cvj:G, 1cvj:H, 4f02:D
7 5vsu:A 387 92 0.2917 0.0724 0.3043 0.32 6aso:A, 2kh9:A, 4n0t:A, 5tf6:A, 5tf6:C
8 2rra:A 99 36 0.1354 0.1313 0.3611 0.83 2kxn:B
9 6snj:A 131 35 0.1146 0.0840 0.3143 0.84 6gbm:B
10 2n7c:A 89 33 0.1146 0.1236 0.3333 1.1
11 2j68:A 680 21 0.1250 0.0176 0.5714 1.3 2w6d:A, 2w6d:B
12 6ckk:A 225 48 0.1458 0.0622 0.2917 1.3 6ckk:B, 6ckl:A, 6ckl:B, 6ckl:C, 6ckm:A, 1eyr:A, 1eyr:B
13 2mb0:B 95 33 0.1146 0.1158 0.3333 2.1
14 8ei2:A 358 16 0.1042 0.0279 0.6250 4.5
15 7ybu:P 507 29 0.1250 0.0237 0.4138 4.8 7ybu:G, 7ybu:C, 7ybu:K, 7ybu:E, 7ybu:I
16 7stz:C 540 26 0.1250 0.0222 0.4615 4.9 6cxy:C, 3ff8:A, 3ff8:B, 8h62:B, 1o6s:B, 2o72:A, 2omt:B, 2omv:B, 2omx:B, 2omy:B, 7stz:D, 6vel:C, 4zt1:A, 4zt1:B, 4zte:A, 4zte:B
17 2fy1:A 108 33 0.1042 0.0926 0.3030 5.0
18 1l3w:A 540 25 0.1354 0.0241 0.5200 5.5 1q55:A, 1q55:B, 1q55:C, 1q55:D, 1q5a:A, 1q5a:B, 1q5b:A, 1q5b:B, 1q5b:C, 1q5c:A, 1q5c:B, 1q5c:C, 1q5c:D
19 6hpj:B 84 34 0.1042 0.1190 0.2941 6.2
20 1fje:B 175 59 0.1771 0.0971 0.2881 7.1 1rkj:A
21 2o1c:A 147 21 0.0938 0.0612 0.4286 7.8 2o1c:B, 2o1c:C, 2o5w:A, 2o5w:C, 5u7e:A, 5u7f:A, 5u7h:A
22 2xy4:A 267 17 0.0833 0.0300 0.4706 9.6 4bbp:A, 2ogw:A, 2ogw:B, 2osv:A, 2osv:B, 2prs:A, 2prs:B, 2ps0:A, 2ps0:B, 2ps9:A, 2ps9:B, 7rcj:A, 7rcj:B, 7rcj:C, 7rcj:D, 7rcj:E, 7rcj:F, 2xqv:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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