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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
NSRTRPRVGHIQFLSCLPLYWGLARTGTLLDFELTKDTPEKLSEQLVRGDLDIGPVTLVEFLKNADDLVAFPDIAVGCDG
PVMSCVIVSQVPLDRLDGARVALGSTSRTSVRLAQLLLSERFGVQPDYYTCPPDLSLMMQEADAAVLIGDAALRANMIDG
PRYGLDVHDLGALWKEWTGLPFVFAVWAARRDYAEREPVITRKVHEAFLASRNLSLEEVEKVAEQAARWEAFDEDTLAKY
FTTLDFRFGAPQLEAVTEFARRVGPTTGFPADVKVELLKPLE

The query sequence (length=282) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 7ahr:B 287 282 0.9965 0.9791 0.9965 0.0 7ahr:A, 7an5:A, 7an5:B, 7an6:A, 7an6:B, 7an7:A, 7an7:B, 7an8:A, 7an8:B, 7an9:A, 7an9:B, 7ywc:A, 7ywc:B
2 6o9a:A 271 237 0.2624 0.2731 0.3122 3.02e-22 6o9a:B
3 3a3u:A 270 209 0.2092 0.2185 0.2823 2.82e-07 2czl:A
4 7w6u:A 597 43 0.0638 0.0302 0.4186 3.5 7w6r:A, 7xby:A
5 6g4d:B 453 117 0.1206 0.0751 0.2906 3.8 7b4i:AAA, 7b4i:BBB, 7b4j:A, 7b4j:B, 6g4d:A, 6g4e:A, 6g4e:B, 6g4f:A, 6g4f:B, 6tb0:A, 6tb0:B, 6tb1:A, 6tb1:B
6 6ssy:A 298 143 0.1206 0.1141 0.2378 4.2 6ssy:B, 6st0:A, 6st0:B
7 3oi8:A 156 34 0.0532 0.0962 0.4412 4.5 3oi8:B
8 5kr3:A 458 113 0.0993 0.0611 0.2478 4.7 5kr3:B, 5kr4:A, 5kr4:B, 5kr5:A, 5kr5:B
9 8the:A 712 48 0.0532 0.0211 0.3125 6.1
10 4xqk:A 1517 92 0.0816 0.0152 0.2500 6.2 4xqk:B
11 1eb6:A 177 60 0.0674 0.1073 0.3167 6.9
12 8umv:D 329 46 0.0603 0.0517 0.3696 7.1 8ui7:D, 8ui8:D, 8ui9:D, 8uii:D, 8umt:D, 8umw:D, 8umy:D, 8un0:D, 8unj:D, 6vvo:D, 7z6h:D
13 1obf:O 335 39 0.0496 0.0418 0.3590 7.6 1obf:P
14 1jlk:A 141 51 0.0674 0.1348 0.3725 7.9
15 4fln:B 464 23 0.0390 0.0237 0.4783 9.0 4fln:A, 4fln:C
16 3lez:A 260 50 0.0567 0.0615 0.3200 9.1

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218