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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
NSQFNAFLTNIRPTDPQKEDWKGGAKTLRERLNNYEPLKDIVVSTFLQGSIRRSTAIRPLNGKRPDVDIVVVTNLDHNQI
APQEAMDLFVPFLEKYYPEKWVPQGRSFGITLSYVELDLVITAIPASGEEKNLLEQLYRSESVLTVNSLEEQKDWRLNKS
WKPSEIQDAPLSEWKAHPLVLPDRDENKWGRTHPLAQIRWTAEKNRACNGHYINLVRAVKWWRQQNSDNLPKYPKGYPLE
HLIGNALDDGTPSMGKGLVQLIDTFLSRWAYVYSLRSKPSLPDHGVEEHDVLARLSAEDFCLFYEGLEDAAIIARSALAS
QDPKESAELWRKLFGTKFPFP

The query sequence (length=341) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 7ljm:A 348 347 1.0000 0.9799 0.9827 0.0 7ljm:B
2 7to3:C 357 346 0.8006 0.7647 0.7890 0.0 7d4j:A, 7d4o:A, 7d4o:B, 7d4s:A, 7d4u:A, 7ljl:A, 7ljl:B, 7to3:D, 7tqd:C
3 6p8j:C 300 327 0.2199 0.2500 0.2294 0.053 6p8j:A, 6p8j:B, 6p8j:D
4 1q4s:A 142 55 0.0469 0.1127 0.2909 0.28 1q4s:B, 1q4t:A, 1q4t:B, 1q4u:A, 1q4u:B, 3r32:A, 3r32:B, 3r34:A, 3r34:B, 3r35:A, 3r35:B, 3r37:A, 3r37:B, 3r3a:A, 3r3a:B, 3r3b:A, 3r3b:B, 3r3c:A, 3r3c:B, 3r3d:A, 3r3d:B, 3r3f:A, 3r3f:B, 3tea:A, 3tea:B
5 7x4g:A 297 59 0.0587 0.0673 0.3390 0.67
6 4nwj:A 504 88 0.0762 0.0516 0.2955 1.1 4my4:A, 4nwx:A, 4qax:A, 7tl8:A
7 7jfs:A 958 94 0.0528 0.0188 0.1915 2.2 7jnb:A, 7jnd:A, 7jnf:A, 5kdj:B, 5kdj:A, 5kdn:A, 5kds:A, 5kdu:A
8 6sce:A 614 81 0.0704 0.0391 0.2963 3.5
9 2d7d:A 621 27 0.0323 0.0177 0.4074 4.2 2nmv:A, 3v4r:B, 3v4r:A
10 6o8e:A 592 40 0.0440 0.0253 0.3750 4.5 1d9z:A, 2fdc:B, 6o8e:B, 6o8f:A, 6o8f:B, 6o8g:A
11 2fdc:A 505 40 0.0440 0.0297 0.3750 4.8
12 2e8y:A 712 66 0.0499 0.0239 0.2576 8.0 2e8y:B, 2e8z:A, 2e8z:B, 2e9b:A, 2e9b:B
13 1yle:A 330 38 0.0411 0.0424 0.3684 9.0
14 6n6a:A 181 37 0.0352 0.0663 0.3243 9.9 6n6c:A, 6n6d:A, 6n6e:A, 6n6f:A, 6n6g:A, 6n6h:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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