Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
NSNVVTMIRAGSYPKVNPTPTWVRAIPFEVSVQSGIAFKVPVGSLFSANFRTDSFTSVTVMSVRAWTQLTPPVNEYSFVR
LKPLFKTGDSTEEFEGRASNINTRASVGYRIPTNLRQNTVAADNVCEVRSNCRQVALVISCCFN

The query sequence (length=144) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 7m3t:L 157 144 1.0000 0.9172 1.0000 9.39e-104 1a34:A, 5bkl:A, 5bkl:J, 5bkl:O, 5bkl:D, 5bkl:II, 5bkl:E, 5bkl:F, 5bkl:HH, 5bkl:K, 5bkl:I, 5bkl:H, 5bkl:G, 5bkl:GG, 5bkl:KK, 5bkl:JJ, 5bkn:A, 5bkn:J, 5bkn:O, 5bkn:D, 5bkn:II, 5bkn:E, 5bkn:F, 5bkn:HH, 5bkn:K, 5bkn:I, 5bkn:G, 5bkn:GG, 5bkn:KK, 5bkn:B, 5bkn:H, 5bkn:L, 5bkn:M, 5bkn:JJ, 5bkq:A, 5bkq:F, 5bkq:G, 5bkq:H, 5bkq:K, 5bkq:M, 5bkq:O, 5bkq:II, 5bkq:JJ, 7m2t:O, 7m2t:II, 7m2t:E, 7m2t:HH, 7m2t:F, 7m2t:D, 7m2t:EE, 7m2t:GG, 7m2t:DD, 7m2t:K, 7m2t:J, 7m2t:I, 7m2t:A, 7m2t:H, 7m2t:B, 7m2t:C, 7m2t:G, 7m2t:L, 7m2t:M, 7m2t:N, 7m2t:CC, 7m2t:FF, 7m2t:JJ, 7m2t:LL, 7m2t:MM, 7m2t:NN, 7m2t:OO, 7m2t:PP, 7m2t:KK, 7m2t:BB, 7m2v:KK, 7m2v:II, 7m2v:D, 7m2v:FX, 7m2v:HH, 7m2v:G, 7m2v:GG, 7m2v:H, 7m2v:K, 7m2v:I, 7m2v:L, 7m2v:A, 7m2v:O, 7m2v:J, 7m2v:E, 7m2v:NN, 7m2v:B, 7m2v:C, 7m3r:A, 7m3r:F, 7m3r:G, 7m3r:H, 7m3r:K, 7m3r:O, 7m3r:II, 7m3t:J, 7m3t:O, 7m3t:F, 7m3t:HH, 7m3t:D, 7m3t:G, 7m3t:K, 7m3t:I, 7m3t:A, 7m3t:E, 7m3t:H, 7m3t:GG, 7m3t:KK, 7m3t:B, 7m3t:II, 7m3t:JJ, 7m50:A, 7m50:J, 7m50:O, 7m50:II, 7m50:F, 7m50:HH, 7m50:D, 7m50:G, 7m50:K, 7m50:I, 7m50:E, 7m50:H, 7m50:GG, 7m50:KK, 7m50:B, 7m50:L, 7m50:JJ, 7m54:O, 7m54:B, 7m54:F, 7m54:G, 7m54:HH, 7m54:H, 7m54:K, 7m54:II, 7m54:JJ, 7m57:A, 7m57:J, 7m57:B, 7m57:N, 7m57:C, 7m57:D, 7m57:E, 7m57:HH, 7m57:F, 7m57:O, 7m57:H, 7m57:EE, 7m57:GG, 7m57:I, 7m57:DD, 7m57:K, 7m57:L, 7m57:M, 7m57:G, 7m57:CC, 7m57:FF, 7m57:JJ, 7m57:LL, 7m57:MM, 7m57:NN, 7m57:OO, 7m57:BB, 7m57:KK, 7m57:PP, 7m57:II, 4nia:J, 4nia:O, 4nia:A, 4nia:B, 4nia:C, 4nia:D, 4nia:F, 4nia:E, 4nia:G, 4nia:H, 4nia:K, 4nia:I, 4nia:L, 4nia:M, 4nia:N, 4oq8:A, 4oq9:A, 4oq9:J, 4oq9:O, 4oq9:B, 4oq9:N, 4oq9:C, 4oq9:D, 4oq9:E, 4oq9:F, 4oq9:G, 4oq9:H, 4oq9:I, 4oq9:K, 4oq9:L, 4oq9:M
2 5wwp:B 591 82 0.1458 0.0355 0.2561 2.7
3 9brd:a 770 33 0.0833 0.0156 0.3636 5.2 9b8o:a, 6wlw:R, 6wm2:R
4 4jzo:G 217 39 0.0903 0.0599 0.3333 6.7 4jzn:I, 4jzo:D, 4jzo:A, 4jzo:C, 4z0x:B
5 7khr:a 750 33 0.0764 0.0147 0.3333 8.7
6 3iyd:F 479 80 0.1181 0.0355 0.2125 8.9
7 4kn7:X 517 80 0.1181 0.0329 0.2125 8.9
8 6psr:L 548 80 0.1181 0.0310 0.2125 9.0 6n58:L, 6n61:F
9 6n4c:F 558 80 0.1181 0.0305 0.2125 9.0 8ad1:F, 6b6h:F, 7bef:F, 7beg:F, 7c17:F, 7c97:F, 6ca0:F, 7chw:F, 7dy6:F, 8ftd:L, 6jnx:F, 8jo2:F, 6k4y:F, 7khb:F, 7khc:F, 7khe:F, 7khi:F, 6ldi:F, 7mkd:L, 7mke:L, 7mki:L, 7mkj:L, 7n4e:F, 6n57:L, 6n62:F, 6oul:L, 6p18:F, 2p7v:B, 6pb4:F, 6pb5:F, 6pb6:F, 6psq:L, 6pss:L, 6pst:L, 6psu:L, 6psv:L, 6psw:L, 7szj:F, 8to1:L, 8to6:L, 8to8:L, 8toe:L, 8tom:L, 5vt0:L, 7vwy:F, 7vwz:F, 7w5w:F, 7w5x:F, 7w5y:F, 6wmu:F, 6xh7:F, 6xh8:F, 6xl5:F, 6xl9:F, 6xlj:F, 6xll:F, 8y6u:F, 4yln:F, 4yln:L, 4yln:R, 4ylo:F, 4ylo:L, 4ylo:R, 4ylp:F, 4ylp:L, 4ylp:R

[Back]

Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218