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BioLiP
>protein
NSGLPTTLGKLDERLRNYLKKGTKNSAQFEKMVILTENKGYYTVYLNTPLAEDRKNVELLGKMYKTYFFKKGESKSSYVI
NGPGKTNEYAY

The query sequence (length=91) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 2k3u:A 91 91 1.0000 1.0000 1.0000 1.84e-61
2 8cp6:B 1084 35 0.1209 0.0101 0.3143 1.1
3 8hwj:A 162 44 0.1429 0.0802 0.2955 1.1 8hwj:B, 8hwj:C, 8hwj:D
4 5o6u:F 336 47 0.1868 0.0506 0.3617 1.3 5o7h:F
5 2r61:A 195 64 0.2308 0.1077 0.3281 2.2 2z8l:A
6 6rw7:A 208 32 0.1099 0.0481 0.3125 2.3
7 4h44:C 289 38 0.1648 0.0519 0.3947 5.3 4ogq:C, 1tu2:B, 2zt9:C
8 5wgr:A 664 51 0.1868 0.0256 0.3333 5.4 5wgs:A, 5wgt:A, 5wgu:A, 5wgv:A, 5wgw:A, 5wgx:A, 5wgy:A, 5wgz:A
9 4bxc:A 929 22 0.1099 0.0108 0.4545 6.1 4bxc:B, 3zgb:A, 3zgb:B, 3zge:A, 3zge:B
10 2de6:B 390 33 0.1648 0.0385 0.4545 7.5 7bug:A, 7bug:B, 7bug:C, 7bui:A, 7bui:B, 7bui:C, 2de5:A, 2de5:B, 2de5:C, 2de6:A, 2de6:C, 2de7:A, 2de7:B, 2de7:C, 6ll0:A, 6ll0:B, 6ll0:C, 6ll1:A, 6ll1:B, 6ll1:C, 6ll4:A, 6ll4:B, 6ll4:C, 6llf:A, 6llf:B, 6llf:C, 6llh:A, 6llh:B, 6llh:C, 6llk:A, 6llm:A, 4nb8:A, 4nb8:B, 4nb8:C, 4nb9:A, 4nb9:B, 4nb9:C, 4nba:A, 4nba:B, 4nba:C, 4nbb:A, 4nbb:B, 4nbb:C, 4nbc:A, 4nbc:B, 4nbc:C, 4nbd:A, 4nbd:B, 4nbd:C, 4nbe:A, 4nbe:B, 4nbe:C, 4nbf:A, 4nbf:B, 4nbf:C, 4nbg:A, 4nbg:B, 4nbg:C, 4nbh:A, 4nbh:B, 4nbh:C, 3vmg:A, 3vmg:B, 3vmg:C, 3vmh:A, 3vmh:B, 3vmh:C, 3vmi:A, 3vmi:B, 3vmi:C, 1ww9:A
11 6zhp:B 341 32 0.1319 0.0352 0.3750 8.7 7fdy:A, 7fdy:B, 7fdy:C, 7ff7:A, 7ff7:B, 7ff7:C, 3fyx:A, 4gcp:A, 4gcp:B, 4gcq:A, 4gcq:B, 4gcs:A, 1gfm:A, 1gfn:A, 1gfo:A, 1gfp:A, 1gfq:A, 4lse:A, 4lse:B, 4lse:C, 4lsi:A, 4lsi:B, 4lsi:C, 1mpf:A, 5nuo:C, 5nuo:A, 5nuo:E, 5nuq:A, 5nuq:B, 5nuq:D, 5nuq:F, 5nur:E, 5nur:C, 5nur:A, 3o0e:A, 3o0e:F, 3o0e:C, 3o0e:D, 3o0e:E, 3o0e:B, 2omf:A, 2zfg:A, 6zhv:B, 6zhv:A, 6zhv:C, 2zld:A, 2zld:B
12 8vis:D 236 44 0.1868 0.0720 0.3864 9.7 8vis:B, 8vis:F, 8vis:H

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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