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BioLiP
>protein
NSEEDYPNGTWLGDENNPEMRVRCAIIPSDMLHISTNCRTAEKMALTLLDYLFHREVQAVSNLSGQGKHGKKQLDPLTIY
GIRCHLFYKFGITESDWYRIKQSIDSKCRTAWRRKQR

The query sequence (length=117) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 8yzt:C 121 117 1.0000 0.9669 1.0000 7.78e-88 8htx:A, 8htx:B, 7yuk:A, 8yzt:D, 8yzt:A
2 6ach:A 364 18 0.0769 0.0247 0.5000 5.4 6ach:B, 6ach:C, 6ach:D, 6ach:E, 6ach:F, 6ach:G, 6ach:H
3 7ypp:A 165 21 0.0769 0.0545 0.4286 5.5 7ypp:C, 7ypp:D, 7ypp:E, 7ypp:B, 7ypp:F, 7ypr:A, 7ypr:B, 7ypr:C, 7ypr:D, 7ypr:E, 7ypr:F
4 8aa2:G 435 18 0.0684 0.0184 0.4444 6.2
5 9em9:A 512 40 0.0940 0.0215 0.2750 8.9 9em9:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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