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BioLiP
>protein
NRVRGNLENLFLQCPKPTLQQISHIAQQLGLEKDVVRVWFCNRRQKGKR

The query sequence (length=49) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 8g8e:X 140 49 1.0000 0.3500 1.0000 3.89e-31 8g87:X, 8g88:X, 8g8b:X, 8g8g:X, 8sps:M, 7u0g:K
2 3l1p:A 147 49 0.7959 0.2653 0.7959 3.25e-24 8bx2:A, 6ht5:E, 3l1p:B, 8sps:L, 8spu:L, 6t90:K, 7u0g:M, 7u0g:L, 7u0i:L, 7u0i:M
3 8bx1:A 127 48 0.7755 0.2992 0.7917 1.34e-23
4 7xrc:C 134 47 0.6327 0.2313 0.6596 8.67e-18 2xsd:C
5 1gt0:C 137 47 0.5510 0.1971 0.5745 1.59e-13 1cqt:A, 1cqt:B, 1e3o:C, 1hf0:A, 1hf0:B, 1o4x:A, 1oct:C
6 5wc9:A 136 47 0.5102 0.1838 0.5319 1.97e-11 1au7:A, 1au7:B, 5wc9:B, 5wc9:E, 5wc9:F
7 5hod:A 61 44 0.3673 0.2951 0.4091 2.80e-06 5hod:D
8 3d1n:I 150 42 0.4082 0.1333 0.4762 3.02e-06 3d1n:K, 3d1n:J, 3d1n:L, 3d1n:M, 3d1n:N, 3d1n:O, 3d1n:P
9 4egc:A 539 48 0.3061 0.0278 0.3125 0.001
10 1jgg:A 57 45 0.3469 0.2982 0.3778 0.002 1jgg:B
11 6es3:K 72 46 0.3265 0.2222 0.3478 0.003 6es2:K, 6es2:L, 6es3:M, 5lty:K, 5lty:M, 5lux:K, 5lux:L, 7q3o:K, 7q3o:C, 7q3o:E, 7q3o:G, 7q4n:K, 7q4n:C
12 1zq3:P 68 44 0.3061 0.2206 0.3409 0.006
13 1ig7:A 58 43 0.3061 0.2586 0.3488 0.007
14 3a01:F 61 44 0.2857 0.2295 0.3182 0.009 3a01:B, 3lnq:A
15 2me6:A 71 45 0.4082 0.2817 0.4444 0.012
16 3cmy:A 60 44 0.2857 0.2333 0.3182 0.013
17 2lkx:A 68 43 0.3265 0.2353 0.3721 0.038
18 4rbo:A 55 32 0.2653 0.2364 0.4062 0.041 4rbo:D
19 8osb:E 62 44 0.2857 0.2258 0.3182 0.049
20 4rdu:D 62 27 0.2245 0.1774 0.4074 0.057 4rdu:A, 4xrs:I, 4xrs:G
21 1fjl:A 65 42 0.2653 0.2000 0.3095 0.061 1fjl:B, 1fjl:C
22 4qtr:C 57 26 0.2041 0.1754 0.3846 0.063 4qtr:A, 4qtr:B, 4qtr:D
23 5zjr:A 64 43 0.3265 0.2500 0.3721 0.064 5zjq:A, 5zjs:A, 5zjt:A, 5zjt:E
24 1le8:A 53 46 0.2857 0.2642 0.3043 0.067 1akh:A, 1yrn:A
25 5ez2:A 169 36 0.2857 0.0828 0.3889 0.12 5ez2:B, 5f6z:A, 5f6z:D, 5f6z:B, 5f6z:C, 7o2y:AAA, 7o3k:A, 7vnl:A, 7vnl:B, 7vns:A, 7vns:B, 7yx1:A, 7yx1:B
26 5flv:M 229 43 0.3265 0.0699 0.3721 0.15 5flv:A, 5flv:E, 5flv:I, 4s0h:A, 4s0h:B, 4s0h:E, 4s0h:F, 6wc2:N, 6wc2:M, 6wc2:O, 6wc5:I, 6wc5:N, 2x6u:A, 2x6v:A, 2x6v:B
27 6e8c:A 135 40 0.2449 0.0889 0.3000 0.16 6a8r:A, 6a8r:B, 6dfy:C, 6dfy:D, 7dw5:A, 7dw5:B, 6u81:A, 6u82:A, 6u82:D, 5z2t:C, 5z2t:D, 5z6z:A, 5zfw:A, 5zfy:A, 5zfz:A
28 6e8c:A 135 30 0.1837 0.0667 0.3000 1.0 6a8r:A, 6a8r:B, 6dfy:C, 6dfy:D, 7dw5:A, 7dw5:B, 6u81:A, 6u82:A, 6u82:D, 5z2t:C, 5z2t:D, 5z6z:A, 5zfw:A, 5zfy:A, 5zfz:A
29 2d5v:A 135 44 0.3061 0.1111 0.3409 0.18 2d5v:B, 8t0f:A, 8t11:A
30 8eml:A 58 25 0.2449 0.2069 0.4800 0.19 8eml:B
31 2r5z:A 75 25 0.2245 0.1467 0.4400 0.20 9ant:A, 9ant:B, 5jlw:A, 5jlw:D, 5jlx:A, 5jlx:D, 2r5y:A, 4xic:A, 4xic:D, 4xid:A, 4xid:D
32 8ik5:C 67 46 0.3265 0.2388 0.3478 0.26 8ike:C, 8ilw:C
33 1puf:A 77 43 0.3265 0.2078 0.3721 0.33 2lp0:A
34 1b72:A 68 26 0.2449 0.1765 0.4615 0.33
35 8pna:A 67 43 0.3061 0.2239 0.3488 0.35 8pm5:A, 8pm5:D, 8pm5:G, 8pm5:M, 8pm5:J, 8pm7:A, 8pm7:C, 8pm7:E, 8pm7:G, 8pmc:A, 8pmc:C, 8pmc:E, 8pmc:G, 8pmf:A, 8pmn:A, 8pmv:A, 8pmv:D, 8pmv:G, 8pmv:J, 8pn4:A, 8pn4:D, 8pn4:G, 8pn4:M, 8pn4:J, 8pnc:A, 8pnc:K, 8pnc:E, 8pnc:H
36 1ahd:P 68 25 0.2245 0.1618 0.4400 0.41
37 1nk2:P 77 43 0.3061 0.1948 0.3488 0.48 1nk3:P
38 8ejo:A 56 36 0.2245 0.1964 0.3056 0.51 8ejo:B, 8ejp:A, 8ejp:B
39 9b8u:B 66 37 0.2449 0.1818 0.3243 0.56 9b8u:A, 9b8u:C, 9b8u:D
40 3rkq:A 58 43 0.3061 0.2586 0.3488 0.56 3rkq:B
41 1rqx:C 338 27 0.2449 0.0355 0.4444 0.57 1rqx:A, 1rqx:B, 1rqx:D, 1tyz:A, 1tyz:B, 1tyz:C, 1tyz:D, 1tz2:A, 1tz2:B, 1tz2:C, 1tz2:D, 1tzj:A, 1tzj:B, 1tzj:C, 1tzj:D, 1tzk:A, 1tzk:B, 1tzk:C, 1tzk:D, 1tzm:A, 1tzm:B, 1tzm:C, 1tzm:D
42 7v2b:D 376 29 0.2449 0.0319 0.4138 0.72 7v2b:A, 7v3w:A, 7v3w:D
43 4uus:A 67 25 0.2041 0.1493 0.4000 0.81 4uus:E
44 1lfu:P 82 38 0.2245 0.1341 0.2895 0.93 1b72:B, 1b8i:B, 4cyc:B, 1puf:B, 2r5y:B, 2r5z:B, 4uus:B, 4uus:F, 5zjq:B, 5zjr:B, 5zjs:B, 5zjt:B
45 4xrm:B 64 35 0.2653 0.2031 0.3714 0.99 5bng:B, 5bng:A, 5eg0:A, 5ego:A, 8vts:B, 8vts:D, 8vtt:D, 4xrm:A, 4xrs:A, 4xrs:B
46 2l7p:A 100 42 0.2041 0.1000 0.2381 1.5 5yvx:A
47 4y0v:A 165 25 0.1837 0.0545 0.3600 1.6 4y0v:B, 4ylg:A, 4ylg:B
48 2h1k:B 60 25 0.2041 0.1667 0.4000 1.8 2h1k:A
49 8cg6:A 1208 23 0.2041 0.0083 0.4348 1.8
50 8cg5:A 1282 23 0.2041 0.0078 0.4348 1.8 6fij:B
51 6no5:A 239 21 0.2041 0.0418 0.4762 2.7 6no0:A, 6no0:B, 6no1:A, 6no2:A, 6no2:B, 6no3:A, 6no3:B, 6no4:A, 6no5:B, 6no5:C, 6no5:D
52 5fm7:B 422 38 0.2857 0.0332 0.3684 2.8
53 8oo7:E 443 38 0.2857 0.0316 0.3684 2.8 8av6:E, 8av6:D, 8av6:F, 6fhs:E, 6fhs:D, 6fhs:F, 6fml:E, 6fml:D, 6fml:F, 8oo7:D, 8oo7:F, 8ooc:D, 8ooc:E, 8ooc:F, 8oop:D, 8oop:E, 8oop:F, 8oor:D, 8oor:E, 8oor:F, 4ww4:B
54 4cyc:A 66 25 0.2041 0.1515 0.4000 3.4 1b8i:A
55 7vw3:A 1052 17 0.2041 0.0095 0.5882 3.6 5axw:A, 5czz:A, 7el1:A, 7eni:A, 7enr:A, 8jft:A, 8jg9:A, 8jg9:D
56 8ips:A 573 26 0.2041 0.0175 0.3846 4.4 8ipt:C, 8ipt:D, 7zda:C, 7zdb:C, 7zdc:C, 7zdf:C, 7zdg:C, 7zdk:C, 7zdl:C, 7zdt:C, 7zdu:C, 7zdw:C, 7ze5:C, 7zec:C
57 8ki7:A 2003 27 0.2041 0.0050 0.3704 4.9
58 5hmp:B 712 16 0.1837 0.0126 0.5625 5.2 5hmp:A, 4zg4:B, 4zg4:E
59 4l0o:H 373 32 0.2041 0.0268 0.3125 6.0 4l0o:A, 4l0o:C, 4l0o:E, 4l0o:G, 4l0o:M, 4l0o:O
60 1l9a:A 87 26 0.2041 0.1149 0.3846 6.4 1lng:A, 3ndb:A, 2v3c:A, 2v3c:B, 4xco:A, 4xco:B
61 6m3d:C 108 26 0.1633 0.0741 0.3077 6.8 1du0:A, 1du0:B, 1hdd:C, 1hdd:D, 2hdd:A, 2hdd:B, 3hdd:A, 3hdd:B, 2hos:A, 2hos:B, 2hot:A, 2hot:B
62 6o9a:A 271 39 0.2653 0.0480 0.3333 7.4 6o9a:B
63 3a01:A 78 45 0.2653 0.1667 0.2889 8.2 3a01:E
64 1h1l:A 478 23 0.2041 0.0209 0.4348 9.8 1h1l:C, 1qgu:A, 1qgu:C, 1qh1:A, 1qh1:C, 1qh8:A, 1qh8:C

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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