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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
NRRYELFKDVSDADWNDWRWQVRNRIETVEELKKYIPLTKEEEEGVAQCVKSLRMAITPYYLSLIDPNDPNDPVRKQAIP
TALELNKAAADLEDPLHEDTDSPVPGLTHRYPDRVLLLITDMCSMYCRHCTRRRFAGQSDDSMPMERIDKAIDYIRNTPQ
VRDVLLSGGDALLVSDETLEYIIAKLREIPHVEIVRIGSRTPVVLPQRITPELVNMLKKYHPVWLNTHFNHPNEITEEST
RACQLLADAGVPLGNQSVLLRGVNDCVHVMKELVNKLVKIRVRPYYIYQCDLSLGLEHFRTPVSKGIEIIEGLRGHTSGY
CVPTFVVDAPGGGGKTPVMPNYVISQSHDKVILRNFEGVITTYSEPINYTPGCNCDVCTGKKKVHKVGVAGLLNGEGMAL
EPVGLERNKR

The query sequence (length=410) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 2a5h:B 410 410 1.0000 1.0000 1.0000 0.0 2a5h:A, 2a5h:D, 2a5h:C
2 7bi7:A 279 182 0.1000 0.1470 0.2253 0.003 7bi7:B, 7jmb:A, 7jmb:B
3 6zk3:A 319 71 0.0390 0.0502 0.2254 1.6 6zk1:A, 6zk1:B, 6zk1:C, 6zk1:D, 6zk2:A, 6zk2:B, 6zk2:C, 6zk2:D, 6zk3:B, 6zk3:C, 6zk3:D, 6zk3:E, 6zk3:F, 6zk4:A, 6zk4:B, 6zk4:C, 6zk4:D
4 6fxr:A 700 89 0.0561 0.0329 0.2584 2.4 6fxk:A, 6fxm:A, 6fxt:A, 6fxx:A, 6fxy:A, 8one:A, 6te3:A, 6tec:A, 6tes:A, 6teu:A, 6tex:A, 6tez:A, 6wfv:A
5 6omn:G 108 17 0.0220 0.0833 0.5294 3.9 6omn:E, 6omn:H
6 5hxw:A 433 95 0.0610 0.0577 0.2632 4.1 5hxw:B, 5hxw:C, 5hxw:D, 5hxw:E, 5hxw:F
7 5i39:A 383 95 0.0610 0.0653 0.2632 4.7
8 7sno:A 506 67 0.0439 0.0356 0.2687 5.0
9 5j1m:A 166 39 0.0317 0.0783 0.3333 5.4 5j1l:C, 5j1m:C
10 4jc0:A 424 126 0.0780 0.0755 0.2540 5.6 4jc0:B
11 7pkq:b 241 109 0.0732 0.1245 0.2752 6.4
12 5c5c:A 432 58 0.0415 0.0394 0.2931 6.6
13 6agm:A 334 73 0.0537 0.0659 0.3014 8.7 6agm:B, 6agm:C, 6agm:D
14 7sn8:I 634 90 0.0561 0.0363 0.2556 8.8
15 7z8g:A 3047 32 0.0268 0.0036 0.3438 9.8 8fdu:A, 7z8l:f
16 8pqw:A 2892 32 0.0268 0.0038 0.3438 10.0 8pqy:A, 8pqz:A, 8pqz:J

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218