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BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
NRQILTRGKQSKKFGTDEVTFDKDSRLDYLTGFHKRKLQRQKKAQEFIKEQERLRKIEERQKIRQERKEVMEEQLKTFKE
SLNAITEIYDDSTTVELETLEPNDNFEYLAQLNNVKLEKAKFRYLTKNERRINQRKANDNK

The query sequence (length=141) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 7nac:5 141 141 1.0000 1.0000 1.0000 4.08e-98 7nad:5
2 7naf:5 105 141 0.7376 0.9905 0.7376 2.82e-61
3 8ia0:Ca 117 113 0.2837 0.3419 0.3540 1.07e-13
4 6msj:B 411 51 0.1206 0.0414 0.3333 0.56 8cvt:B, 5gjq:I, 5gjr:I, 5gjr:w, 5l4g:I, 5m32:d, 6msb:B, 6msd:B, 6mse:B, 6msk:B, 7qxn:B, 7qxp:B, 7qxu:B, 7qxw:B, 7qxx:B, 7qy7:B, 7qyb:B, 5t0c:AB, 5t0c:BB, 5t0g:B, 5t0h:B, 5t0i:B, 5vfp:B, 5vfq:B, 5vfr:B, 5vfs:B, 7w37:B, 7w38:B, 7w39:B, 7w3a:B, 7w3c:B, 7w3f:B, 7w3g:B, 7w3h:B, 7w3i:B, 7w3j:B, 7w3k:B, 6wjd:B, 6wjn:B
5 6qm3:A 268 40 0.0780 0.0410 0.2750 1.1 6qhj:A, 6qm3:B, 4xat:A
6 8ojl:A 777 49 0.1489 0.0270 0.4286 1.7 9cc0:A, 9cc0:C, 9cc0:E, 9cc0:B, 9cc0:D, 9cc0:F, 9cc3:B, 9cc3:C, 9cc3:D, 9cc3:E, 7krz:A, 7krz:C, 7krz:B, 7krz:D, 7krz:E, 7krz:F, 7ksl:B, 7ksl:A, 7ksl:F, 7ksm:B, 7ksm:A, 7ksm:C, 7ksm:D, 7ksm:E, 7ksm:F, 7nfy:A, 7nfy:B, 7nfy:C, 7nfy:E, 7nfy:D, 7nfy:F, 7ng4:B, 7ng4:C, 7ng4:D, 7ng4:A, 7ng4:E, 7ng4:F, 7ng5:A, 7ng5:D, 7ng5:B, 7ng5:C, 7ng5:E, 7ng5:F, 7ngc:A, 7ngc:B, 7ngc:C, 7ngc:D, 7ngc:E, 7ngc:F, 7ngf:A, 7ngf:F, 7ngf:B, 7ngf:C, 7ngf:D, 7ngf:E, 7ngl:A, 7ngl:B, 7ngl:C, 7ngl:D, 7ngl:E, 7ngl:F, 7ngp:A, 7ngp:B, 7ngp:C, 7ngp:D, 7ngp:E, 7ngp:F, 7ngq:A, 7ngq:B, 7ngq:C, 7ngq:D, 7ngq:E, 7ngq:F, 8ojl:B, 8ojl:C, 8ojl:D, 8ojl:E, 8ojl:F, 8oka:A, 8oka:B, 8oka:C, 8oka:D, 8oka:E, 8oka:F, 8om7:A, 8om7:B, 8om7:C, 8om7:D, 8om7:E, 8om7:F, 8ovf:A, 8ovf:B, 8ovf:C, 8ovf:D, 8ovf:E, 8ovf:F, 7oxo:A, 7oxo:B, 7oxo:C, 7oxo:D, 7oxo:E, 7oxo:F, 7p09:A, 7p09:B, 7p09:D, 7p09:C, 7p09:E, 7p0b:A, 7p0b:B, 7p0b:C, 7p0b:D, 7p0b:E, 7p0b:F, 7p0m:A, 7p0m:B, 7p0m:C, 7p0m:D, 7p0m:E, 6wzv:A, 6wzv:B, 6x1m:A, 6x1m:B, 6x27:A, 6x27:B, 6x27:C, 6x27:D, 6x27:E, 6x27:F, 6x27:G, 6x27:H, 6x27:I, 6x27:J, 6x27:K, 6x27:L
7 6dzi:l 200 75 0.1560 0.1100 0.2933 1.7 6dzk:D, 8fr8:e, 5o5j:D, 5o61:BD, 8v9j:d, 8v9k:d, 8v9l:d, 8whx:e, 8wi7:e, 8wi9:e, 8wib:e, 8wid:e, 8wif:e, 5zeb:d, 5zep:d, 5zeu:d
8 3al0:C 564 92 0.1631 0.0408 0.2500 2.6 3afh:A, 3akz:B, 3akz:D, 3akz:C, 3akz:A
9 8e59:A 1230 55 0.1348 0.0154 0.3455 3.6 8e5a:A, 8e5b:A, 7uhf:A, 7uhg:A
10 8j0t:C 534 42 0.0922 0.0243 0.3095 3.9 8j0s:A, 8j0s:B, 8j0s:C, 8j0t:A, 8j0t:B, 8jr0:A, 8jr0:B, 8jr0:C
11 8eoi:K 1116 45 0.1206 0.0152 0.3778 4.0
12 8wea:A 1206 45 0.1206 0.0141 0.3778 4.0
13 8fhs:A 1282 45 0.1206 0.0133 0.3778 4.0 8eog:K, 8fd7:K, 8hlp:A, 8hma:E, 8hmb:D, 8we6:A, 8we7:A, 8we8:A, 8we9:A
14 7a57:B 449 50 0.1206 0.0379 0.3400 5.3
15 7aoi:XI 597 68 0.1348 0.0318 0.2794 5.8
16 5lfu:A 487 34 0.0922 0.0267 0.3824 6.7 5lf5:A, 5lfr:A, 5lfr:B, 5lfv:B, 5lfv:A
17 6yxx:EN 638 98 0.1489 0.0329 0.2143 8.9 6yxy:EN
18 6xun:C 221 30 0.0851 0.0543 0.4000 9.6 6xun:H, 6xun:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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