Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
NRPPIAIVSPQFQEISLPTTSTVIDGSQSTDDDKIVQYHWEELKGPLREEKISEDTAILKLSKLVPGNYTFSLTVVDSDG
ATNSTTANLTVNKAV

The query sequence (length=95) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 6nz0:Z 95 95 1.0000 1.0000 1.0000 7.40e-66
2 2c26:A 250 73 0.2526 0.0960 0.3288 0.10 2c4x:A
3 6aem:A 84 51 0.1789 0.2024 0.3333 0.86 6aem:B
4 7stm:A 801 47 0.1684 0.0200 0.3404 1.1 7stm:B, 7stn:A, 7stn:B, 7sto:B, 7sto:A
5 8jzs:B 486 37 0.1579 0.0309 0.4054 1.2 8jzs:A, 8jzu:A, 8wx4:B, 8wx4:A
6 3las:A 166 31 0.1368 0.0783 0.4194 2.0 3las:B
7 6d41:B 579 51 0.1895 0.0311 0.3529 2.4 6d41:A, 6d6w:A, 6d6w:B, 6d6w:C, 6d6w:D, 6d7f:A, 6d7f:B, 6d7f:C, 6d7f:D, 6d7f:E, 6d7f:F
8 2qdg:A 366 63 0.1789 0.0464 0.2698 2.8 2qap:A, 2qap:B, 2qap:C, 2qap:D, 2qdg:B, 2qdg:C, 2qdg:D, 2qdh:A, 2qdh:B, 2qdh:C, 2qdh:D
9 8hub:C 572 32 0.1263 0.0210 0.3750 3.8 8hub:D
10 4lxo:A 184 43 0.1158 0.0598 0.2558 3.9 4lxo:B
11 8hub:B 545 32 0.1263 0.0220 0.3750 3.9
12 8hu6:B 629 32 0.1263 0.0191 0.3750 4.0 8hu6:A, 8hu6:C, 8hu6:D
13 7qx0:B 443 61 0.1895 0.0406 0.2951 4.5 7qx0:A, 7qx0:C, 7qx0:D, 7qx3:B, 7qx3:C, 7qx3:A, 7qx3:D
14 6dlh:A 704 16 0.1158 0.0156 0.6875 4.8 6dms:A, 6dns:A
15 5jon:A 509 48 0.1789 0.0334 0.3542 8.0 5jon:B
16 7c7u:A 579 59 0.1895 0.0311 0.3051 8.0 7c7r:B, 7c7r:A, 7c7u:B
17 5xxz:B 1310 31 0.1053 0.0076 0.3226 8.6
18 5xya:A 1358 31 0.1053 0.0074 0.3226 9.4 5xxz:A
19 7edd:A 1394 31 0.1053 0.0072 0.3226 9.9 5xyr:A

[Back]

Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218